BAC Information

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BAC

Clone NameMSMg01-237L19
Chromosome9 (Build37)
Map Location 98,835,046 - 98,835,261
singlet/doubletsinglet
Overlap genenone
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347
Downstream geneFoxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237L19.T7 (MSMg01no237_l19.b1)MSMg01-237L19.TJ (MSMg01no237_l19.g1)
ACCAG402600AG402601
length652786
length of high quality
(start - end)
188 (65 - 252)219 (60 - 278)
definitionCHROMAT_FILE: MSMg01no237_l19.b1 PHD_FILE: MSMg01no237_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:38 2005CHROMAT_FILE: MSMg01no237_l19.g1 PHD_FILE: MSMg01no237_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCAGACCACGTGATCTGAGATCACTGAGAACATTAACTGCTTGGAA
GGAATTTTAAGCACAGGAGGCAGGGGTGCTGAAAGAGCAGGGAAAGAGCT
AGAAGTAAATGCAAGGATGAATCAAAAAGTTCCCTGGGGCTGGAGAGATG
GCTCAGAGGTTAAGAACACTGACTGCTCTTCTAGAGGTCCTGAGTTCAGC
TCCCAGCAACCACATGATGGCTCACAACCATCTGTCATGGGATCTGATGC
CCTTANGNGTACAGAAGACACTTACAGTGTACTCACATACATAAAATATT
TCTTACCCCCCTCAACATAAGATAAATTAGAACTACTATACTTTTGGGCT
GGAGAGGTGGCTCATCAGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCT
GAGTTCAATTCCCAGCAACCACATGGTGGCTCTTAACCATCTGTAATACG
ATCTGATGCCCTCTTCTGGTGTGTCTAAAGACAGCTACAGTGTACTTGTA
TAAATAAAAATAAATAAGTCTTTTTAAAAATTCCCAAAACCTATTCCGAG
AATAAAATTAATATTCTACATTAAAATTAAAGATGATGTTTTCTGTAGTG
TTCCTGGATGATGATGATGAAGAATCACGACAAAGCCCACCATTATTTAT
AT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTGAGAGCTGGGTATCAGGTACCTAGTTAGCTTATCTTAC
CCCATCCTTATCACAGTCATGGAAGCAGGGCGATTCCCATCTTACACGGG
TGCCAATATACACATCTACATGTGTTGAAGTTAGTGGCTTGCCTAAGCCC
TCTCTGGTCCTAAAGCCATTTTCTCACTGAGGGGGTTTTTCGAGGGGAAG
GTTGGTTGGTGGGGATGTATGGGAGNGACNCNNCCCNCCTAAACAAAATT
TTTTTTATTAAATCCAAATTCCAGACACCTCCTTACATTAATTTTTCCCC
CCCCCTCCTCACCACCCTCCAATTCTTTTTTTACTTACTTTTCTCTTATA
TTTTCCCCACCATTATTAATCCTCCCTCCATTTTCACCCCTTTTTATATC
TCCTCTTTTCTCCCTTCCTTCTTTTTTTTCTTTTTTGTTTTTTTTTGATT
CTTCTCTCCACCCTTTTTTTACCTCTCTCTCCCTTTCCTTCTCTTTTTTC
TTTATATGCCAACTTCGCATTTATTTTCCTTTATCCATACAAATATTCCC
TCGTAGTTTCTCTACTATAATTCACCTGCTCGTATTATAACACTATCCAC
CAACCCATACTTCACTTTTTTTTTCCTCTCCCTTCCCTTTTTAATTTTTA
TTGTTCTACTTTCATTTCCCTCCTTTTATTTTCTTTTCTCTTCTTTTCTC
TTTCCACCTAGTTTGTATATCTAAATCTGTATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_l19.g1 MSMg01no237_l19.g1 CHROMAT_FILE:
MSMg01no237_l19.g1 PHD_FILE: MSMg01no237_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:38 2005
         (219 letters)



>mm_chr9_98834846_98835464
          Length = 619

 Score =  395 bits (204), Expect = e-114
 Identities = 213/216 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagagctgggtatcaggtacctagttagcttatcttaccccatccttatcacagtca 60
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 416 actgagagttgggtatcaggtacctagttagcttatcttaccccatccttgtcacagtca 357

                                                                       
Query: 61  tggaagcagggcgattcccatcttacacgggtgccaatatacacatctacatgtgttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tggaagcagggcgattcccatcttacacgggtgccaatatacacatctacatgtgttgaa 297

                                                                       
Query: 121 gttagtggcttgcctaagccctctctggtcctaaagccattttctcactgagggggtttt 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 296 gttagtggcttgcctaagccctctctgctcctaaagccattttctcactgagggggtttt 237

                                               
Query: 181 tcgaggggaaggttggttggtggggatgtatgggag 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcgaggggaaggttggttggtggggatgtatgggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)