BAC Information

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BAC

Clone NameMSMg01-237M01
Chromosome9 (Build37)
Map Location 79,565,800 - 79,566,180
singlet/doubletsinglet
Overlap geneCol12a1
Upstream geneLOC384957, EG666456, LOC436085, LOC235509, LOC666479
Downstream geneCox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237M01.T7 (MSMg01no237_m01.b1)MSMg01-237M01.TJ (MSMg01no237_m01.g1)
ACCAG402611AG402612
length794810
length of high quality
(start - end)
267 (130 - 396)381 (123 - 503)
definitionCHROMAT_FILE: MSMg01no237_m01.b1 PHD_FILE: MSMg01no237_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:39 2005CHROMAT_FILE: MSMg01no237_m01.g1 PHD_FILE: MSMg01no237_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAANNAAATTTTTCTTTTTNGGGGTCTTATCCTTTCCCNCCNCCCCNCN
CTTNNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGGTATTTCCCTGAATCCATTTCACATTTCAGTGTT
TGAGATCCAGCTGTGTATGGTTTTGTTGACCCCACCTCCGTTCATTAAAT
CCTGGTTCCTCATCTGTGGGGTGGGTAAACGACCACAGTAAACACCTCAC
ATGGTGTTGTGAGGATTAAACGGATCAGTGCCTAGAAAGCTTATCATTGC
CTCTGACCCATGCTAGGTACTCAGGTACGACTAGTCATCATTGTGGGTGT
GGATTTGAGGATGATAAGTACTCATTTTCTTAAGGTCTTCCACATGTGGG
CTGTTCTGGTAGAATAATTTATATATCACAGTAAAAAATTTAGTGTGAGG
GTGATGATGGTGACTATGATGGCGACCACAGTGAAAACTAGGGTTACTAA
ACTCGGTTTAGGCTTCCTAATGCTTTTCTCTGAAGGTTAGGGTTTGAGCC
CCTAGTCCCATGGGAGAGGTAGGCCGGGCAGAATCACTCAGCTGCATAAT
TACTCCGCTATGTGCTGTCCCGTTATTGGTGGTGCTGGACCTGCTTTTTG
CTTCTTTCTCTTCTCAATAATCTCCCTACTGCAGTAATGATATACTAAGA
CCTATAGGTAGGGAGGCCTGATAGAGTCCCGTATCATGTAGATACGTAGA
TAGATACATAGATTGATAGATAGTTTTATCTTTCTATCACCATC
NCTCCCCCCCCNNNTTCACTTCCTTCTTCCTTTTCTTCTTAAATCCNNNT
CCACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCAGAAAAATTCTTCGCGGAGCGTACAGTACTTCA
CTTCGTTTTCTGGCAATGTTTTCACTCCCTGCTGCAAGCCTGGAGTCCCT
GGCAAAGCCACCAGATTATAAAGAGCGACCTATGCAGCCCGTGCACTTCA
CTGAAAGCGACAGAGACTATAGAGGACATTGCCCTACAGATGGATACACT
GAGTCCCACTTGGCACACAAGCAAGCCACCTTTCCTTCTCCCTCCAAAAC
TCCAAAGAAACCGCCAAACTCCTGTGCCACAGATCTATCTCGGGCACACT
AATCAATCGCTTCTAAAGCCAAGCAGCCCCTGCTGGGCATTCTGCCAGCC
CCGGGTTAAGGTGCAAGCAAGAAGCCACTTTCCCCAGTTATCTTTGGGAA
AGGGCGCGAGGGGTGGCTGTTGGGGTGTTGAACAGAAGCCAGACTGACCT
GAGCCGGAGGTGATATACGGAGCGGGCGTCCAGCAGCCTGTGCGAGGGAT
CCCCCGGGTCTGGTAGGTCGTTGCGCTCTGGTAGCACCTGATGTCCGCCG
GTGTGTAAAAGGCCATGTTATCACTTATTAATTACCGCCTTATTGTCCAG
AGCGAGCGGAAAGCAGAGTACACTGAAATGTATCTTGCATGCACGGATGT
TATACTGCTATCTATCCTGACTTTTGTCCGTATTGAATTAATAATACTTC
CTTCGTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_m01.g1 MSMg01no237_m01.g1 CHROMAT_FILE:
MSMg01no237_m01.g1 PHD_FILE: MSMg01no237_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:39 2005
         (381 letters)



>mm_chr9_79565600_79566380
          Length = 781

 Score =  698 bits (361), Expect = 0.0
 Identities = 376/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttcgcggagcgtacagtacttcacttcgttttctggcaatgttttcactccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||
Sbjct: 201 aattcttcgcggagcgtacagtacttcacttcgttttctggcaatgccttgagtccctgc 260

                                                                       
Query: 61  tgcaagcctggagtccctggcaaagccaccagattataaagagcgacctatgcagcccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaagcctggagtccctggcaaagccaccagattataaagagcgacctatgcagcccgt 320

                                                                       
Query: 121 gcacttcactgaaagcgacagagactatagaggacattgccctacagatggatacactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacttcactgaaagcgacagagactatagaggacattgccctacagatggatacactga 380

                                                                       
Query: 181 gtcccacttggcacacaagcaagccacctttccttctccctccaaaactccaaagaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcccacttggcacacaagcaagccacctttccttctccctccaaaactccaaagaaacc 440

                                                                       
Query: 241 gccaaactcctgtgccacagatctatctcgggcacactaatcaatcgcttctaaagccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gccaaactcctgtgccacagatctatctcgggcacactaatcaatcgcttccaaagccaa 500

                                                                       
Query: 301 gcagcccctgctgggcattctgccagccccgggttaaggtgcaagcaagaagccactttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagcccctgctgggcattctgccagccccgggttaaggtgcaagcaagaagccactttc 560

                                
Query: 361 cccagttatctttgggaaagg 381
           |||||||||||||||||||||
Sbjct: 561 cccagttatctttgggaaagg 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)