BAC Information

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BAC

Clone NameMSMg01-260F10
Chromosome9 (Build37)
Map Location 89,048,421 - 89,215,548
singlet/doubletdoublet
Overlap gene4930579C12Rik, Bcl2a1b, Mthfs
Upstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F10.T7 (MSMg01no260_f10.b1)MSMg01-260F10.TJ (MSMg01no260_f10.g1)
ACCAG403032AG403033
length760761
length of high quality
(start - end)		523 (65 - 587)587 (72 - 658)
definitionCHROMAT_FILE: MSMg01no260_f10.b1 PHD_FILE: MSMg01no260_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:24 2005CHROMAT_FILE: MSMg01no260_f10.g1 PHD_FILE: MSMg01no260_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(89,215,026 - 89,215,548)(89,048,421 - 89,049,007)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGTAAAATTTCCAACGCCACATACGTGGCACTTGGTGGGACAGAAGGTG
ACTCAGTCTTTCTGCTCTGTGGCCCCTGCTGTGCTATAAAAGGGGAAATC
CAAGAGGGGTGCGGGACCTGCCTGTGTATTTCTTATGAGTACAATAAAGG
ACAGAGGGATTGGCTTGGGAGGGCTCTAAGGACATCCAGTTATGAGACTT
TTCAAATCAGGGATGCTTTGAAATGAGTTATTCTAACAAATGAACATTGT
ACAACAGGTATGTGCTTGAAAAGATTATTCTGATTAAACCTATATTTTCA
CTGGGATTTTACTCGAGAACCCCTCAGCTCTCCAGTCCTTGCAATAGCTA
TCAATATGAGACACCCAAAGCCTAGTGTAGAAGACAGGTAGGGTTTATTT
GTTAAGTAAGGCTTAATAGGATGTGTGAGGGACAATAGCCAAAGGCCCAA
TATCCCAATCTACATGAATTATTTCCTACGTCTCTGAAACAAGCAACCAT
TCTTCAAGGTGCGTGTGGTTGACTGGCTTGTTCGTTTAGACTTCTTCAAG
AGGGAGCAATGGGCTGTCAGAAAGCACCCTGACATACCGTAATCCTATAG
GTTATATTAAGCTCCTGATACCAGATTTAGAGAGTCTACTTCAGGATCTT
CCCGACAGTTTATAACCTTATGCCTCCTCCCTGGCCAAAGTATATGACTC
AGTCTCCCTN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGAAAGCTAGCCAAGGGTGTGCTAGAGC
TCAGATCCCACTTCAATCACTAACTAGGTCAGAGGCTCCAAGATGGATGT
CAGAACTCTAATCCTGCATGTCAGTCTGAGGTGAGGAACACAAACCACAT
AAAGTCATGTCTTAAGGTTTTACTGCTGTGAACAGACACCATGACCAATT
CAACTCTTATAAAGGACAACGTTTAATTGGGACTGACTTACAGGTTCAGA
TTCTGGTCTATTATCATCAAGGTGAGAGCACGGCAACATCCAGGCCTGCG
TGGCACAAGAGAAGCTGAGAGTTCTATATCTTCATCTGAAGGCGGCTAGC
ACCAGGCAGCTATGACGACAGTCTTTAAGACCACACCCACATTGACATGC
CTACTCTAACAAGGCCACACCTACTTCAATGGGGCCATACCTTCTAATAG
TGCCATTCCTTGGGCCATGCATATACAAACCATCACAGGTCATATACTAA
GCCCTTGTTCCAAAGACATTGCAGTTTAGGGGATTTTGATAGAATGAGAA
GCCACCCCACCCTGTGGAGAGCATGTAAAGCACAAGGAAGAAAGGGAGTG
CTGCTACAAGACCTGAAGAACAAGGGAGAGGCCCTGCTTCTCCTGCAGCA
TTGGGTTCACACTGTAAGATATTTACCTGCAGGTGCTTGTGAGGAAAGAA
AGTTGTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f10.b1 MSMg01no260_f10.b1 CHROMAT_FILE:
MSMg01no260_f10.b1 PHD_FILE: MSMg01no260_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:24 2005
         (523 letters)



>mm_chr9_89214826_89215748
          Length = 923

 Score =  973 bits (503), Expect = 0.0
 Identities = 518/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgccacatacgtggcacttggtgggacagaaggtgactcagtctttctgctctgtggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 acgccacatacgtggcacttggtgggacagaaggtgactcagtctttctgctctgtggcc 664

                                                                       
Query: 61  cctgctgtgctataaaaggggaaatccaagaggggtgcgggacctgcctgtgtatttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cctgctgtgctataaaaggggaaatccaagaggggtgcgggacctgcctgtgtatttctt 604

                                                                       
Query: 121 atgagtacaataaaggacagagggattggcttgggagggctctaaggacatccagttatg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 603 atgagtacaataaaggacagaggaattggcttgggagggctctaaggacatccagttatg 544

                                                                       
Query: 181 agacttttcaaatcagggatgctttgaaatgagttattctaacaaatgaacattgtacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agacttttcaaatcagggatgctttgaaatgagttattctaacaaatgaacattgtacaa 484

                                                                       
Query: 241 caggtatgtgcttgaaaagattattctgattaaacctatattttcactgggattttactc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caggtatatgcttgaaaagattattctgattaaacctatattttcactgggattttactc 424

                                                                       
Query: 301 gagaacccctcagctctccagtccttgcaatagctatcaatatgagacacccaaagccta 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 423 gagaacccctcagctctccagtccttgcaatagctattaatatgagacacctaaagccta 364

                                                                       
Query: 361 gtgtagaagacaggtagggtttatttgttaagtaaggcttaataggatgtgtgagggaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgtagaagacaggtagggtttatttgttaagtaaggcttaataggatgtgtgagggaca 304

                                                                       
Query: 421 atagccaaaggcccaatatcccaatctacatgaattatttcctacgtctctgaaacaagc 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 303 atagccaaaggcccaatatcccaatctatatgaattatttcctacgtctctgaaacaagc 244

                                                      
Query: 481 aaccattcttcaaggtgcgtgtggttgactggcttgttcgttt 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaccattcttcaaggtgcgtgtggttgactggcttgttcgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_f10.g1 MSMg01no260_f10.g1 CHROMAT_FILE:
MSMg01no260_f10.g1 PHD_FILE: MSMg01no260_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:24 2005
         (587 letters)



>mm_chr9_89048221_89049207
          Length = 987

 Score = 1073 bits (555), Expect = 0.0
 Identities = 579/587 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaagctagccaagggtgtgctagagctcagatcccacttcaatcactaactaggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaagctagccaagggtgtgctagagctcagatcccacttcaatcactaactaggtca 260

                                                                       
Query: 61  gaggctccaagatggatgtcagaactctaatcctgcatgtcagtctgaggtgaggaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggctccaagatggatgtcagaactctaatcctgcatgtcagtctgaggtgaggaacac 320

                                                                       
Query: 121 aaaccacataaagtcatgtcttaaggttttactgctgtgaacagacaccatgaccaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaccacataaagtcatgtcttaaggttttactgctgtgaacagacaccatgaccaattc 380

                                                                       
Query: 181 aactcttataaaggacaacgtttaattgggactgacttacaggttcagattctggtctat 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcttataaaggacaacatttaattgggactgacttacaggttcagattctggtctat 440

                                                                       
Query: 241 tatcatcaaggtgagagcacggcaacatccaggcctgcgtggcacaagagaagctgagag 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 441 tatcatcaaggtgagagcatggcaacatccaggcctgcgtggcacaagaaaagctcagag 500

                                                                       
Query: 301 ttctatatcttcatctgaaggcggctagcaccaggcagctatgacgacagtctttaagac 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttctatatcttcatctgaaggcggctagcaccaggcagctatgatgacagtctttaagac 560

                                                                       
Query: 361 cacacccacattgacatgcctactctaacaaggccacacctacttcaatggggccatacc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 cacacccacattgacatgcctactctaacaaggccacacctacttcaatggggccacacc 620

                                                                       
Query: 421 ttctaatagtgccattccttgggccatgcatatacaaaccatcacaggtcatatactaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ttctaatagtgccattccttgggccatgcatatacaaaccatcacaggttatatactaag 680

                                                                       
Query: 481 cccttgttccaaagacattgcagtttaggggattttgatagaatgagaagccaccccacc 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 cccttgttccaaagacattgcagtttaggggattttgacagaatgagaagccaccccacc 740

                                                          
Query: 541 ctgtggagagcatgtaaagcacaaggaagaaagggagtgctgctaca 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtggagagcatgtaaagcacaaggaagaaagggagtgctgctaca 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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