BAC Information

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BAC

Clone NameMSMg01-260J24
Chromosome9 (Build37)
Map Location 90,892,685 - 90,893,381
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260J24.T7 (MSMg01no260_j24.b1)MSMg01-260J24.TJ (MSMg01no260_j24.g1)
ACCAG403237AG403238
length750851
length of high quality
(start - end)		702 (46 - 747)223 (77 - 299)
definitionCHROMAT_FILE: MSMg01no260_j24.b1 PHD_FILE: MSMg01no260_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:46 2005CHROMAT_FILE: MSMg01no260_j24.g1 PHD_FILE: MSMg01no260_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACAAATTACACACATTGTTTACTAAGCCAATAGTTACTGACA
TGTATAAAATAATTATAATAGCTGAAGGCTATCGTTCAATGACACCATGC
TTGCCCAGCATGCAGAAGTCATAATTTCAATCCCTGAATCCTGCAAAATT
ATTTAAAATATATACAAAAATAAATAAAGTAGTAGATAACCTTGACAATT
ACTGAAAGAAACCTTTGTGCTTTGCTAGAAGATGGCGTAAGATTCTTCTA
GAAGCTGAACCAGCAGGCTGAGCTTGCCTCCTGTTTCCTTTGACCCACAT
ACCAGTTGCCTATTTTGCCTCTTTAATTCCCTACTCCTCTTCTCTCTTTC
TCCCTTCTCCACGTTATTTTGTCATGAAAGGAATTCCTGAGCCAGTGAGA
TGGCTCAGTGGTTAAAGGTAGTTGTCATAAAACATGACGGCCACCTTTGT
CTACACGGGAGACTCACAGAGTGGAAGAGCACAGCTAACTCTTTAAAGCT
GTCATATGGCTGCCAACTCCTGCCTTGGCATATATATGCATGGATACTAA
GTAAATAGACATTTTAAAAATATATTTATTTATTTTATATATGTTAGTAT
ACTGTTACTCTCTTCAGATACATCAGAAGAGGGCATTAGATCCCATAACA
GATGGTTGTGAGCCACCAAGTATATGCTGGGAACTGAACTCAGGACCTCN


NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCTCCATTT
TTAAATGGGGTTACTTGATTTTATGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCGCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTTGCCTTTTGCTTGCAGAAGCTTTGCAGTTTTTGTT
TGTTTGTTTGTTTGTTTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTACCA
CACACCCTCCCTCCCTTTCCCTACTTTTTTTTTTTTTACTCCTACCTATC
TCTCTTACTATCCTTTCTCTTTTTTTTCCTCCCCCCCCCCCCTTCCTCTT
TTATCTTACTTTCTCTCTCTCAATACATCCCCCCTCCACATAAAATAAAT
CACTTTTTTTTCTTTCTCCTTTTCTTCCTACTTTTTTTTCCTTTTCCCTC
TAACTCTTTTCTCCTTTTCTTTTTTTACCTACTTATTCATCCTCCCTCTT
CTAATCATAATTTACTTCCACCCTCCCCTCTTCCCTCTTTTTATCTCCCT
TTCCCTACTTTCTCTCCCATTTTTTTCCTCTTTCTACCTCTTCTTATCTT
CTCACCCTATAACATTCACTCCTATTCTTCATCCTTCTTTCCTTCCATTC
TACACCCTCACCTACTCTATACTTTTTCCCCCCCTTTCTATCTTCTTCTC
TTTTTCTTCCTTTATCTCTCTACCCCTCTTTTCCCTTCCCCTTATCTTAC
CATTATCTCTTTATTTCCTCTTTTTACCTCAATTTATTTTCCTCTCTCAC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_j24.b1 MSMg01no260_j24.b1 CHROMAT_FILE:
MSMg01no260_j24.b1 PHD_FILE: MSMg01no260_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:46 2005
         (702 letters)



>mm_chr9_90892610_90893711
          Length = 1102

 Score = 1317 bits (681), Expect = 0.0
 Identities = 693/697 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacacaaattacacacattgtttactaagccaatagttactgacatgtataaaa 64
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattccacacaaattaaaaacattgtttactaagccaatagttactgacatgtataaaa 713

                                                                       
Query: 65  taattataatagctgaaggctatcgttcaatgacaccatgcttgcccagcatgcagaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 taattataatagctgaaggctatcgttcaatgacaccatgcttgcccagcatgcagaagt 653

                                                                       
Query: 125 cataatttcaatccctgaatcctgcaaaattatttaaaatatatacaaaaataaataaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cataatttcaatccctgaatcctgcaaaattatttaaaatatatacaaaaataaataaag 593

                                                                       
Query: 185 tagtagataaccttgacaattactgaaagaaacctttgtgctttgctagaagatggcgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tagtagataaccttgacaattactgaaagaaacctttgtgctttgctagaagatggcgta 533

                                                                       
Query: 245 agattcttctagaagctgaaccagcaggctgagcttgcctcctgtttcctttgacccaca 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 532 agattcttctagaagctgaaccagcaggctgagcttgtctcctgtttcctttgacccaca 473

                                                                       
Query: 305 taccagttgcctattttgcctctttaattccctactcctcttctctctttctcccttctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 taccagttgcctattttgcctctttaattccctactcctcttctctctttctcccttctc 413

                                                                       
Query: 365 cacgttattttgtcatgaaaggaattcctgagccagtgagatggctcagtggttaaaggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cacgttattttgtcatgaaaggaattcctgagccagtgagatggctcagtggttaaaggt 353

                                                                       
Query: 425 agttgtcataaaacatgacggccacctttgtctacacgggagactcacagagtggaagag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agttgtcataaaacatgacggccacctttgtctacacgggagactcacagagtggaagag 293

                                                                       
Query: 485 cacagctaactctttaaagctgtcatatggctgccaactcctgccttggcatatatatgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cacagctaactctttaaagctgtcatatggctgccaactcctgccttggcatatatatgc 233

                                                                       
Query: 545 atggatactaagtaaatagacattttaaaaatatatttatttattttatatatgttagta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atggatactaagtaaatagacattttaaaaatatatttatttattttatatatgttagta 173

                                                                       
Query: 605 tactgttactctcttcagatacatcagaagagggcattagatcccataacagatggttgt 664
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cactgttactctcttcagatacatcagaagagggcattagatcccataacagatggttgt 113

                                                
Query: 665 gagccaccaagtatatgctgggaactgaactcaggac 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 112 gagccaccaagtatatgctgggaactgaactcaggac 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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