Query= MSMg01no260_n19.b1 MSMg01no260_n19.b1 CHROMAT_FILE:
MSMg01no260_n19.b1 PHD_FILE: MSMg01no260_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:05 2005
(173 letters)
>mm_chr9_50374279_50374851
Length = 573
Score = 290 bits (150), Expect = 3e-83
Identities = 162/166 (97%)
Strand = Plus / Minus
Query: 7 ggaattcatgtgtgtgatccaagactgggtgttccatattccctcctccttgtgtgggag 66
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggaattcgtgtgtgtgaaagaagactgggtgttccatattccctcctccttgtgtgggag 313
Query: 67 ggaaacagagctatggttggggtggggtggcaggtggagcattctatcctgaagtgagca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggaaacagagctatggttggggtggggtggcaggtggagcattctatcctgaagtgagca 253
Query: 127 ggagaagatggaggattttatgggagactcagactgagatgttaac 172
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggagaagatggaggattttatgggagactcagactgagatgttaac 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space: 93225
Effective search space used: 93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no260_n19.g1 MSMg01no260_n19.g1 CHROMAT_FILE:
MSMg01no260_n19.g1 PHD_FILE: MSMg01no260_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:05 2005
(574 letters)
>mm_chr9_50276750_50277720
Length = 971
Score = 1087 bits (562), Expect = 0.0
Identities = 570/574 (99%), Gaps = 3/574 (0%)
Strand = Plus / Plus
Query: 1 tccctcagcccccagcatgtccagatcctgtacttcctcaagggcccaatctcaaagcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctcagcccccagcatgtccagatcctgtacttcctcaagggcccaatctcaaag--- 257
Query: 61 cctccttctcgaccaagcactcaaacctcttgagcccactacaacaacgattgttatttg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cctccttctcgaccaagtactcaaacctcttgagcccactacaacaacgattgttatttg 317
Query: 121 tgctccttaagcccctctgagtaagcctgcataagctatgtcttcaccatgctgcacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgctccttaagcccctctgagtaagcctgcataagctatgtcttcaccatgctgcacagt 377
Query: 181 gaccagcaccttgcagcagcttcaccatagactccaggatagccaaaggcctccagagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaccagcaccttgcagcagcttcaccatagactccaggatagccaaaggcctccagagat 437
Query: 241 cagcccagccaccaaccttgggtttgatgggcttgttgtttgtggtggctgttgttgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagcccagccaccaaccttgggtttgatgggcttgttgtttgtggtggctgttgttgcta 497
Query: 301 ttgtctttttttccactcctggctttgtgtccaaagcaggaaacttgagcccttgtaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgtctttttttccactcctggctttgtgtccaaagcaggaaacttgagcccttgtaccc 557
Query: 361 ttccaaatttgacaaggagatgggatgtatgcattgcgcttctatgttcttgttgttccg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttccaaatttgacaaggagatgggatgtatgcattgcgcttctatgttcttgttgttccg 617
Query: 421 aatttaaggtatacaaaataaaagagaggagcacatacagagatggacttgtcacttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatttaaggtatacaaaataaaagagaggagcacatacagagatggacttgtcacttcct 677
Query: 481 ggcctcttggctaagagcaaatattcagatataattctacaaatacagatgtctgtctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggcctcttggctaagagcaaatattcagatataattctacaaatacagatgtctgtctcc 737
Query: 541 caaggacaagctccgtgaggacgacactgatgtg 574
||||||||||||||||||||||||||||||||||
Sbjct: 738 caaggacaagctccgtgaggacgacactgatgtg 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 971
Length adjustment: 10
Effective length of query: 564
Effective length of database: 961
Effective search space: 542004
Effective search space used: 542004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
