Query= MSMg01no260_o03.b1 MSMg01no260_o03.b1 CHROMAT_FILE:
MSMg01no260_o03.b1 PHD_FILE: MSMg01no260_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:07 2005
(254 letters)
>mm_chr9_98184444_98185097
Length = 654
Score = 480 bits (248), Expect = e-140
Identities = 251/252 (99%)
Strand = Plus / Plus
Query: 1 tgcttcccatgcagactagtcaaggagaacaagagaatggagctaatgagcccattaagg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgcttcccatgcagactagtcaaggagaacaagagaagggagctaatgagcccattaagg 260
Query: 61 tgtcttcccaaacaaatgatttccttgtccttccaccccaaaacagaaacagctgcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttcccaaacaaatgatttccttgtccttccaccccaaaacagaaacagctgcagtt 320
Query: 121 ttaaaaatagcatgctttcatcttttgaaggaaatatgccaagtttttaacaccagctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaaatagcatgctttcatcttttgaaggaaatatgccaagtttttaacaccagctat 380
Query: 181 ctttaggtgacaaggaacagtttaacattatttatttcttcctatttttctgaattttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttaggtgacaaggaacagtttaacattatttatttcttcctatttttctgaattttcc 440
Query: 241 aaattgtcttta 252
||||||||||||
Sbjct: 441 aaattgtcttta 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no260_o03.g1 MSMg01no260_o03.g1 CHROMAT_FILE:
MSMg01no260_o03.g1 PHD_FILE: MSMg01no260_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:07 2005
(513 letters)
>mm_chr9_98324225_98325138
Length = 914
Score = 922 bits (477), Expect = 0.0
Identities = 505/515 (98%), Gaps = 3/515 (0%)
Strand = Plus / Minus
Query: 1 tctcaccggtacccccctgggagttcttcaaacgcctcttgagtgttgacaacgcgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 714 tctcaccggtacccccctgggagttcttcaaacgcctcttgagtgttgaaaacgcgtctc 655
Query: 61 cttcaggtttgctagcgtcatcaaggaagaggccatttacaggccttagtctaaagctca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 654 cttcaggtttgctagcgtcatcaaggaagaggccatttacaggcctttgtctaaagctca 595
Query: 121 gcatccgtggcctggccagttcctaggaagctgatgttttaactctagggatgaagagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcatccgtggcctggccagttcctaggaagctgatgttttaactctagggatgaagagca 535
Query: 181 gagcaactacccacagctctcccaggaaatgatgcgaagttggtggtattaaatatgcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gagcaactacccacagctctcccaggaaatgatgcgaagttggtggtattaaatatgcac 475
Query: 241 tggacaagattgcgctccaggtgaacccatgcacggtggtggtcagagacccaaggcttt 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggacaagaaagcgctccaggtgaacccatgcacggtggtggtcagagacccaaggcttt 415
Query: 301 ttgcgcgtgtggactgacactattctgcgggatcgtgtggttccgccctcttccaggaaa 360
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 414 ttgcgcgtgtggactgacactattctgcgggatcgtgtggttctgtcttcttccaggaaa 355
Query: 361 ggaaagcacagaccttttctggaatttacagtttgtgg--ttttttttttttcagttaat 418
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 354 ggaaagcacagaccttttctggaatttacagtttgtggttttttttttttttcagttaat 295
Query: 419 atattctgggccctttccatacctgtgcacggaaagactccccagtatttcctgtaagct 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 294 atattctgggccctttccatacctgtgcacggaaagactccccagtattt-ctgtaagct 236
Query: 479 tctattactagcttcagctcctatttacctgggtc 513
|||||||||||||||||||||||||||||||||||
Sbjct: 235 tctattactagcttcagctcctatttacctgggtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
