BAC Information

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BAC

Clone NameMSMg01-261B10
Chromosome9 (Build37)
Map Location 60,656,797 - 60,819,726
singlet/doubletdoublet
Overlap geneUaca, ENSMUSG00000052143
Upstream geneMyo9a, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447
Downstream geneA430102L10, LOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261B10.T7 (MSMg01no261_b10.b1)MSMg01-261B10.TJ (MSMg01no261_b10.g1)
ACCAG403574AG403575
length714710
length of high quality
(start - end)
413 (75 - 487)412 (78 - 489)
definitionCHROMAT_FILE: MSMg01no261_b10.b1 PHD_FILE: MSMg01no261_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:23 2005CHROMAT_FILE: MSMg01no261_b10.g1 PHD_FILE: MSMg01no261_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,819,317 - 60,819,726)(60,656,797 - 60,657,208)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACATGAGATCTCCTCTCAAGTTGAAAGTCGAGTTTGAAAGTCA
AGTTTAAGCCAGCCTAGCCCAGACCGACTGTACATCTTTTGATAGTACTT
CTTTTTCATCCAGCTTTCGAGCAAGGGACCTCGTAGCTCAGCAGATCAAG
TACCTTCTTCAAGGTTCCGCAGGAGATCAGTAGATGAGACAGCATTTGCC
TTCAAGTGCTGCTGTCTTTGGAACCCTAGACAATGCAAAGGAGCCTCTGC
CTCTCCCTCCCTCCCTTGACAGAGTCCTTCACACTCCCCACCCCAGCGTC
TGTTCTCTCAAGCATAGATGTTTCCATTGGCATGGTTTTTGTTACCCTCT
ACCACTACAACAGATGAGCAGAAATGCCTTCTCCACTCAGGGACATTCTT
GCTGGCCTCTAGGGTTTCCTGTGACTCAACTGAATGGGGCAAAGGACTGG
ACCTCTAGTTTCAGAGCAGAAACTAAGTCCAGAAAGGCCACCACATCAGA
CAACAGAGCTGGTCAGGCCCAGTTGACTTTTGAATCTGCCTCTGTGCACT
GGGAAACAGGTGCCTAGGGTTGAAATGACCCAAGCAGGGTGTGACGTAAG
CATTCCCAGAAATCTTGTACCCCTTAAGCGGTCTTGACTAGTTCCGGGGG
CGGAATTGGTATCN
NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTTCGCCATTCCATGTTCAGCACAGTTTTCAT
AGGTTTCTGGGAGCTCCAGTGAGAGCAGATTTGAGAGGGTCAAGCTTGGA
GCAGTTCTGAGCATTTGAAATGGTGCAGCCTGGAGCCGATGAGGGCCCAG
AGCATGCAATGCTGGAGAGACTGGAGAGTTAGGCGCCTAAGACCTATACA
AGTGACCATCAAAGCCATCCAGTCAACAGACAGATTGTCAGAATCCTACC
CACCCCTAGCCCGAGAGAGTCCCACAAGCCCTGTGTTTGAAGCCAGTCTG
TGAGTACCTGGTAATTATGCTCTTAGTAGGTAACCACACATCAGCAGCCC
AGGTGGGTGTTTAAATATCCTTATCTGTAGTCAGATGAATGGCTCAGGGT
GCTGTTGGAGTTTGGAAAAATACCTCGGACAGCTAAACTTAGTAAGCACA
GACAGAGTAAGCAGACCGGTGCTTGATGAAAAGTTGAAACACAATTAAAG
AGACTAGCACAACGAGCGAGGGTGAGCTTGCCTGCTAGATTCAGAAGCAG
ATGTTTGGCTGCATTTTCTCTTCAACTTCTGTTTTCTGAATTGTGTGTTC
TCTGTGTGGGTGTGCCCGTATGCGGCGTGCGTGTCGTGTTTCTTTGGATC
CTCAGTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_b10.b1 MSMg01no261_b10.b1 CHROMAT_FILE:
MSMg01no261_b10.b1 PHD_FILE: MSMg01no261_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:23 2005
         (413 letters)



>mm_chr9_60819117_60819926
          Length = 810

 Score =  737 bits (381), Expect = 0.0
 Identities = 404/413 (97%), Gaps = 3/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttgaaagtcgagtttgaaagtcaagtttaagccagcctagcccagaccgactgtaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 610 aagttgaaagtcgagtttgaaagtcaagtttaagccagcctagcccagaccgacagtaca 551

                                                                       
Query: 61  tcttttgatagtacttctttttcatccagctttcgagcaagggacctcgtagctcagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcttttgatagtacttctttttcatccagctttcgagcaagggacctcgtagctcagcag 491

                                                                       
Query: 121 atcaagtaccttcttcaaggttccgcaggagatcagtagatgagacagcatttgccttca 180
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 490 atcaagtaccttcttcaaggttccgc---agatcagtagatgagacagcatttgccttca 434

                                                                       
Query: 181 agtgctgctgtctttggaaccctagacaatgcaaaggagcctctgcctctccctccctcc 240
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 433 agtgctgctgtcattggaaccctagacaatgcaaaggagcctctgcctctccctcccttc 374

                                                                       
Query: 241 cttgacagagtccttcacactccccaccccagcgtctgttctctcaagcatagatgtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 373 cttgacagagtccttcacactccccaccccagcgtctgttctctcaaacatagatgtttc 314

                                                                       
Query: 301 cattggcatggtttttgttaccctctaccactacaacagatgagcagaaatgccttctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cattggcatggtttttgttaccctctaccactacaacagatgagcagaaatgccttctcc 254

                                                                
Query: 361 actcagggacattcttgctggcctctagggtttcctgtgactcaactgaatgg 413
           |||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 253 actcagggacattcttgctggcttctagggtttcctgggactcaactgaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 810
Length adjustment: 9
Effective length of query: 404
Effective length of database: 801
Effective search space:   323604
Effective search space used:   323604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no261_b10.g1 MSMg01no261_b10.g1 CHROMAT_FILE:
MSMg01no261_b10.g1 PHD_FILE: MSMg01no261_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:23 2005
         (412 letters)



>mm_chr9_60656597_60657408
          Length = 812

 Score =  774 bits (400), Expect = 0.0
 Identities = 409/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatgttcagcacagttttcataggtttctgggagctccagtgagagcagatttgagag 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tccatgttcagcacagttttcataggtttctgggatctccagtgagagcagatttgagag 260

                                                                       
Query: 61  ggtcaagcttggagcagttctgagcatttgaaatggtgcagcctggagccgatgagggcc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcaagcttggagcagttccgagcatttgaaatggtgcagcctggagccgatgagggcc 320

                                                                       
Query: 121 cagagcatgcaatgctggagagactggagagttaggcgcctaagacctatacaagtgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagcatgcaatgctggagagactggagagttaggcgcctaagacctatacaagtgacc 380

                                                                       
Query: 181 atcaaagccatccagtcaacagacagattgtcagaatcctacccacccctagcccgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaagccatccagtcaacagacagattgtcagaatcctacccacccctagcccgagag 440

                                                                       
Query: 241 agtcccacaagccctgtgtttgaagccagtctgtgagtacctggtaattatgctcttagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcccacaagccctgtgtttgaagccagtctgtgagtacctggtaattatgctcttagt 500

                                                                       
Query: 301 aggtaaccacacatcagcagcccaggtgggtgtttaaatatccttatctgtagtcagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtaaccacacatcagcagcccaggtgggtgtttaaatatccttatctgtagtcagatg 560

                                                               
Query: 361 aatggctcagggtgctgttggagtttggaaaaatacctcggacagctaaact 412
           |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 aatggctcagggtgctgttggactttggaaaaatacctcggacagctaaact 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)