Query= MSMg01no261_c05.b1 MSMg01no261_c05.b1 CHROMAT_FILE:
MSMg01no261_c05.b1 PHD_FILE: MSMg01no261_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:27 2005
(585 letters)
>mm_chr9_122074651_122075634
Length = 984
Score = 675 bits (349), Expect = 0.0
Identities = 367/373 (98%), Gaps = 3/373 (0%)
Strand = Plus / Minus
Query: 5 gaattcacacatgt-gatacaccattttaggtccatgatcaaggaccccagagggcagat 63
|||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaattcacacatgtgga-a-agcattttaggtccatgatcaaggaccccagagggcagat 314
Query: 64 gtggcttgaggacatggtcatgtggcaacttcatcataccactgctgtcagaaaaaacat 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 313 gtggcttgaggacatggtcatgtggcaacttcatcataccactgctgtcggaaaaaacat 254
Query: 124 ggggcatagagatgctggggaagcccaagctctccctagactcaacaccacacacttata 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 253 ggggcatagagatgctggggaagcccaagctctccctaaactcaacaccacacacttata 194
Query: 184 tacatacctgaatacatacacacatgcataccttacatacatggtcacacacccccacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tacatacctgaatacatacacacatgcataccttacatacatggtcacacacccccacac 134
Query: 244 acccccagacacacatgcacatctgcatatatgttcacatgcatacctacaaacatgcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 acccccagacacacatgcacatctgcatatatgttcacatgcatacctacaaacatgcat 74
Query: 304 agactatcatatactcaaatgcatatctacatacataatctagatatagtatctcacgta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 agactatcatatactcaaatgcatatctacatacataatctagatatagtatctcacgta 14
Query: 364 tacatgcatgcta 376
|||||||||||||
Sbjct: 13 tacatgcatgcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_c05.g1 MSMg01no261_c05.g1 CHROMAT_FILE:
MSMg01no261_c05.g1 PHD_FILE: MSMg01no261_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:27 2005
(546 letters)
>mm_chr9_121948512_121949457
Length = 946
Score = 899 bits (465), Expect = 0.0
Identities = 525/549 (95%), Gaps = 12/549 (2%)
Strand = Plus / Plus
Query: 1 agttcctctgaaggagcagaacatgctcttaataactgagcattaa-cagttcctccagt 59
|||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 209 agttcctctgaaggagcagaacatgctcttaataactgagcattaagc-gttcct----t 263
Query: 60 cttatctggctactgtttttacggggatcaaactcagggcctcatgtttgcaaagtaagc 119
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 c----ctggctactgtttttacggggatcaaactcagggcctcatgttcgcaaagtaagc 319
Query: 120 acttactgactgatggaagatctatgtcttggtaaagaaatagacatgtaggtctacggt 179
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 acttactgactgaaggaagatccgtgtcttggtaaagaaatagacatgtaggtctacggt 379
Query: 180 gcatttagaaccccagacagacatgaccagcccaaagcctccccatactaaagtgctgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatttagaaccccagacagacatgaccagcccaaagcctccccatactaaagtgctgag 439
Query: 240 agtgcaagaatgcaggagagaagtgtgtgtcggtcactgaggcccaaacctgtaatcaca 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 agtgcaagaatgcaggagagaagtgtgtgtccgtcactgaggcccaaacctgtaatcaca 499
Query: 300 gcactgagaagtcttgaggcaggaggatcatcatgagtttgaagtctgcttgggttacag 359
|||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct: 500 gcactgagaagtctcgaggcaggaggatcatcatgagtttgaagactgcctgggttatag 559
Query: 360 ggtgaaaccttgtttccaagaacaagcctcagaccaaaaattctagaggggt-gagggtg 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 560 ggtgaaaccttgtttccaagaacaagcctcagaccaaaaattctagaggggttgagggtg 619
Query: 419 gtgccaactctcctgtgaatatcatcagaatgccagcatggttctcaacagaagcttcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgccaactctcctgtgaatatcatcagaatgccagcatggttctcaacagaagcttcaa 679
Query: 479 ag-tcaggagatggggaaatgatgcatttccaaccctggaagaaaagagctgccaaactc 537
|| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct: 680 aggtcaggagatggggaaatgatgtatttccaaccctgaaagaaaatagctgccaaactc 739
Query: 538 aattactat 546
|||||||||
Sbjct: 740 aattactat 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
