BAC Information

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BAC

Clone NameMSMg01-261F14
Chromosome9 (Build37)
Map Location 61,436,656 - 61,437,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
Downstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261F14.T7 (MSMg01no261_f14.b1)MSMg01-261F14.TJ (MSMg01no261_f14.g1)
ACCAG403762AG403763
length721772
length of high quality
(start - end)
560 (45 - 604)300 (75 - 374)
definitionCHROMAT_FILE: MSMg01no261_f14.b1 PHD_FILE: MSMg01no261_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:43 2005CHROMAT_FILE: MSMg01no261_f14.g1 PHD_FILE: MSMg01no261_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATGAGATCACCCATGCAGTGGGACTGGTAAACCTGTGATAAAGG
CACGCATGCTTACCTGACTCAGCCACCTGGGGGTCATATAGCAATGCAGC
TGCAGTCAGAAAAGTGATCTTTCTAAGACAGGCCTGTTGGTACAGGCTTG
TTGATCCCAGCTGCTCGGGAGGCTAAGGCAGGAAGACTGCAAGCTCGAGG
CTTGCCTGAAACATAGGAAAATTCAAGAGTAGCCCAAGCAAGTTAGCCAG
AGTTGGACTTAAAAATTTAAAGTAGGGCTGGCGATGCAGCTTGGGGGGTG
GAGTGCTTGCCTGCATATTTGGCGCTCTAGGCTTCATTTCTAATGCTGCA
AAAAAGGGAAAAAAGAAGAACGCTTCCTTCTATCTCCTAGCCTTGACAGA
GAATACACATGTTAAGAATGTGATTAGAAATGAGCTATGTATGTGCTTTT
CACACAGGTCAAGCAGGAGGTCCCATGTCCCCTCCACCTGGAGCCTTTGG
GATTGGGGGTGACCCTGACATATCAGATGTGCCTGGTGCCTCATATCCCA
GAATCCAGGGATACCCACCTCCAGCTGGTAGGTGGGTAGCATCGAAACCC
TAAAGACTAGGACTTGCTCTATGTTCCTAAACACCAGTTTTGCTTTTTTC
CCCCTTTTTCCCAAAAAGTCT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGTCATCTTTGGCTGTGTAATGAG
ATTGAAGTAAACCTCCCTCGAGAAGAAAAATGAGGAAGAAAAAGGAGGAG
GAAGAAAGAAAGAAAGAAGCAGATAAATAAATAAAGACAGGTAGGTAAAT
ATAAATGGATCTATCTCAAGCCAAGTCACGGTGATACACAGCTATAGGCA
TTACAGTGGAGGCAGGAGGATTACTGCTGCAAATTCAATGTGGTTTGGAC
TACATGGTGAGCAGAGGCTAGCTTGAGCTAATGAGTTTTATCCTGTCTCA
AAAGAGGAGGGGGGAGGGGGAGGAGGCCATCTGCTCTTATTCCTCATTTC
TTACCCAGCCCCAATACCCCCCCCCCTCCTTTAACTCGCCCTTTACTTCT
TTCTCTTCTCCCGTTTTCCTCTTTTATACTATTCTGTCATCCTCTTCCCT
TTCCCTATTCTCTATCTGAGTTCTTTCTCTCGTCTTCATCTTATTTCGTT
CAATTCTCGAGATCCCCCTCCTAAATCTCTACTATTTTTTTCTTCATTCA
TCGTTTCTATCTTGTTCTTATCCTTTCCTCTTATTCATCCTCCCTCTTTT
TCCTTTTCTATGCTTTTCCCCATATCTCTCCTCCTATTTTCTTTCCTTAT
TCCCCCGAGCACACTATCTCCCTTTGTCCGCCTTCATCCCCCTTTTATCT
TTTTATTCTCCCTAATAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_f14.b1 MSMg01no261_f14.b1 CHROMAT_FILE:
MSMg01no261_f14.b1 PHD_FILE: MSMg01no261_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:43 2005
         (560 letters)



>mm_chr9_61436185_61437144
          Length = 960

 Score =  861 bits (445), Expect = 0.0
 Identities = 479/491 (97%), Gaps = 2/491 (0%)
 Strand = Plus / Minus

                                                                       
Query: 70  ctgactcagccacctgggggtcatatagcaatgcagctgcagtcagaaaagtgatctttc 129
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 960 ctgactcagctacctgggggtcatatagcaatgcagctgcagtcagaaaagcgatctttc 901

                                                                       
Query: 130 taagacaggcctgttggtacaggcttgttgatcccagctgctcgggaggctaaggcagga 189
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 taagacaggcctgttagtacaggcttgttgatcccagctgctcgggaggctaaggcagga 841

                                                                       
Query: 190 agactgcaagctcgaggcttgcctgaaacataggaaaattcaagagtagcccaagcaagt 249
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 840 agactgcaagctcgaggcttgcctgaaac--aggaaaattcaagagtagcccaagcaagt 783

                                                                       
Query: 250 tagccagagttggacttaaaaatttaaagtagggctggcgatgcagcttggggggtggag 309
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 782 tagccagagttggacttaaaaatttaaagtagggctggcgatgcggcttggggggtggag 723

                                                                       
Query: 310 tgcttgcctgcatatttggcgctctaggcttcatttctaatgctgcaaaaaagggaaaaa 369
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgcttgcctgcatatttggggttctaggcttcatttctaatgctgcaaaaaagggaaaaa 663

                                                                       
Query: 370 agaagaacgcttccttctatctcctagccttgacagagaatacacatgttaagaatgtga 429
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agaagaatgcttccttctatctcctagccttgacagagaatacacatgttaagaatgtga 603

                                                                       
Query: 430 ttagaaatgagctatgtatgtgcttttcacacaggtcaagcaggaggtcccatgtcccct 489
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 602 ttagaaatgagctatgtatgtgcttttcacacaggtcaagcaggaggccccgtgtcccct 543

                                                                       
Query: 490 ccacctggagcctttgggattgggggtgaccctgacatatcagatgtgcctggtgcctca 549
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 542 ccacctggagcctttgggattgggggtgaccctgacatatcagatgtgcctggtgcttca 483

                      
Query: 550 tatcccagaat 560
           |||||||||||
Sbjct: 482 tatcccagaat 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)