BAC Information

Click to search

BAC

Clone NameMSMg01-261F17
Chromosome9 (Build37)
Map Location 3,545,706 - 3,546,051
singlet/doubletsinglet
Overlap geneGucy1a2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261F17.T7 (MSMg01no261_f17.b1)MSMg01-261F17.TJ (MSMg01no261_f17.g1)
ACCAG403768AG403769
length732700
length of high quality
(start - end)
334 (384 - 717)573 (80 - 652)
definitionCHROMAT_FILE: MSMg01no261_f17.b1 PHD_FILE: MSMg01no261_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:43 2005CHROMAT_FILE: MSMg01no261_f17.g1 PHD_FILE: MSMg01no261_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAAAAACTAACAGTGTAATACAATGTCTGTCACTAGATTTTGGCT
TCATTTTTATGCAGTTTATTTCACGACAACTAAGTTATTTGATAGGAATT
TTGCCTATCTAGCAATTATTAAAATTTAAGTGTCTATGTTATTTTTAGTT
CTTTTGGAATTTCTTAATCATGACAATAAAGTCTGAAATACCACTATTTA
TCTTTTAATAATTTTATAACAAATAGTAAGTTGCTCTGCCTGTCCTGAAA
ATCAATAGGTAGGCTGTTCTCAAACCTGCCTCTACTTTTTGAGTGCTGTG
ATTGAAGGCATGATTTAACATGCCCAGCTTTTTGTCAGTTGTTTTTGGTT
TGAGTTTTTCTCATATTTTTCAAAACAGATTACATATTGAGCATCACATG
GTAGAAACTGATTGTAGGCCCATGCTTATATTAGTCTATAAGCTTTCAGT
TTTAAAGCTATGCTGAAAATATTGTTTAGTGGTAGGTTACTTGCCTAATG
TGCATGAGGCCCTAGCTTCTAATATTCAGCACTACAAACGCAAAAGTAAC
TATAAATACACACACACACACACACACACACACAAACACACATTCTGTTA
TTATCTCTTTAAAGACTTTGCCTATAGTTAGAACTCTTTCTGTTGATTTT
TTTCTCTTTCTTTTTTTTGGTGTTGTTGTTGG
NNCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATG
GCAGAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACACTGAGATTCCACTTCACTACAGTCAGAATGGCT
AAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
GGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCCGGCGTTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTTAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACATAATGGAATACTACTCAGCTATTTAAAAAAA
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGCCGGTATCATCC
TGAGTGAAGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCTCTG
ATACGTGGATAATAGCCCAGAAACTTAGGATACCCAAGATATANGATACN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_f17.b1 MSMg01no261_f17.b1 CHROMAT_FILE:
MSMg01no261_f17.b1 PHD_FILE: MSMg01no261_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:43 2005
         (334 letters)



>mm_chr9_3545506_3546239
          Length = 734

 Score =  600 bits (310), Expect = e-176
 Identities = 332/348 (95%), Gaps = 16/348 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagttgtttttggtttgagtttttctcatatttttcaaaacagattacatattgagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagttgtttttggtttgagtttttctcatatttttcaaaacagattacatattgagca 260

                                                                       
Query: 61  tcacatggtagaaactgattgtaggcccatgcttatattagtctataagctttcagtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacatggtagaaactgattgtaggcccatgcttatattagtctataagctttcagtttt 320

                                                                       
Query: 121 aaagctatgctgaaaatattgtttagtggtaggttacttgcctaatgtgcatgaggccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagctatgctgaaaatattgtttagtggtaggttacttgcctaatgtgcatgaggccct 380

                                                                       
Query: 181 agcttctaatattcagcactacaaacgcaaaagtaactataaatacacacacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttctaatattcagcactacaaacgcaaaagtaactataaatacacacacacacacac 440

                                                                       
Query: 241 acacacacaca--------------aacacacattctgttattatctctttaaagacttt 286
           |||||||||||              |||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacacacacacacacacacacaaacacacattctgttattatctctttaaagacttt 500

                                                           
Query: 287 gcctatagttagaactctttctgttgatttttttctctttcttttttt 334
           |||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 501 gcctatagttagaactctttctgttgatttttttct-ttt-ttttttt 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)