CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAAACACGCGG
AATTCATACATATTATTTCTCTATTTGGCATCCAACAATGCCAGTCCTTA
TAGTTTTTGTTTGAAATTCATTTTATCTTTTTTTTTTTTTCTTTCTTAAC
CTGCTTCATTCTTTCTAAGTTCACATCCAGGTAGGATTGCTTGTTTGTCT
GTTTATGTTTGTTTAAGGAGCTCACACTGTAGCCCAGGCTGGCCTTGAAC
TTGCAGCAATCCTCGTGCCTCAGCCTTCCAAGCGCTAGAATTATAGTCAT
GAGCCACTATTGTGGCATCTAGTTTATTTGATCCCAGAATTTTCCAATGC
GTCTCATCTCAGGGCATATCTACTATTAGGAAAGCTCCCATACCCCAGCC
TTTACCAGCGGGATCGCTGTAGCCACTCCTTCCCCCCCCCCCCCGCCTCC
TCCCCCCCACCTCCCCTTCTACTTGACCCTCTGCTTTCTAAGGCATCAGA
TCTCAATGCTTCTCTCTCTGTAGCCACTCCTTCTTCCCCCCTTGGCTCCT
TCTATCCAATTCTCTTTCTATTTGACCCTTTGTTTTCTAAAGCAACATAA
TCTCATTGATTTTCTCTCAAGGACAACCCATATCCGATTACAAAAGTCTT
AACTACTCCACTGATGTACAGTATTGGTACTGTTACTTTTTTTTCATAAT
ATTTTTTGGTCTTTTATTCTCAGAGTCTCCCCTTTCTTTACCATCTTTTT
ATATG

ATGCAGTGGGAGGCCCGGAGGNCGCCTGGCCGTTCCNGACCCGAGAACNA
NAGAAGGACTTTCANAACGGGAAGCANAANGNNNNNANGGGCACGAACNC
GGAGAAACGGNNGAAGAACCCCGACCGNCCNNCNNCCNCACACNCCAAAA
GAAGNNAGAAGAAAGAGGGAAACCACGCCAANAACGGAACACCNACCCAA
CAAGCNAGGGCNAGCGAAACCGGGGCNCCCGGAGAAGAACCNAGAACAGT
TTTTTTACTAACCAATATAATCCCTAACTACACTCTAAATATTTGTCCTT
CTACCCACAGATAACTTTTTTTTTTATCAAGAAAANCNCNCNNNGCAACA
GAAGGAGACCATTACACCCCCCCACAACCAANCAAAAGGCNGACAGGNGG
ANCCCAGNCCCAACGGANANANCCAAACCAAACACCAGCACCCAAGGCCC
AGGGAACACCCGGGAAGAGGGGCACAGGCGGGAAGAANCCAAGAGCCAGA
GGGAGCNNNCGGCGAGACCGGGNCNCCGGGGAAGGNCAGGAGCNACACCC
CANAGNCCCGCCAACACAGCGGCCNAAAGGGGACCAGAACCAGGACGCAA
CCACAGAAGAACNAACACGCAAAGGAGGAAGCACAGGAGGCCGNAACCCC
CATATTTTTTTTTGTTGGCAACTAGGGGGACACTGTCAAGAAACAGTCCT
CCCCCAGGGAATAAAAGCAAGGTTGGCATCCCAATATT

Query= MSMg01no261_g22.b1 MSMg01no261_g22.b1 CHROMAT_FILE:
MSMg01no261_g22.b1 PHD_FILE: MSMg01no261_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:49 2005
         (442 letters)



>mm_chr9_83773124_83773965
          Length = 842

 Score =  677 bits (350), Expect = 0.0
 Identities = 410/446 (91%), Gaps = 31/446 (6%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcatacatatta-tttctctatttggcatccaacaatgccagtccttatagttttt 61
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcatacatattaattt-tctatttggcatccaacaatgccagtccttatagttttt 261

                                                                       
Query: 62  gtttgaaattcatt----ttatctttttttttttttctttcttaacctgcttcattcttt 117
           ||||||||||||||    ||||||||||||||    ||||||||||||||||||||||||
Sbjct: 262 gtttgaaattcattcattttatcttttttttt----ctttcttaacctgcttcattcttt 317

                                                                       
Query: 118 ctaagttcacatccaggtaggattgcttgtttgtctgtttatgtttgtttaaggagctca 177
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctaagttcacatgcaggtaggattgcttgtttgtctgtttatgtttgtttaaggagctca 377

                                                                       
Query: 178 cactgtagcccaggctggccttgaacttgcagcaatcctcgtgcctcagccttccaagcg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cactgtagcccaggctggccttgaacttgcagcaatcctcgtgcctcagccttccaagcg 437

                                                                       
Query: 238 ctagaattatagtcatgagccactattgtggcatctagtttatttgatcccagaattttc 297
           |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 438 ctaggattatagtcataagccactattgtggcatctagtttagttgatcccagaattttc 497

                                                                       
Query: 298 caatgcgtctcatctcagggcatatctactattaggaaagctcccataccccagccttta 357
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caatgcgtctcgtctcagggcatatctactattaggaaagctcccataccccagccttta 557

                                                                       
Query: 358 ccagcgggatcgctgtagccactccttcccccccccccccgcctcctcccccccacctcc 417
           |||||||||||||||||||||||||  |||||||||||||                  ||
Sbjct: 558 ccagcgggatcgctgtagccactcc--ccccccccccccc------------------cc 597

                                     
Query: 418 c-cttctacttgaccctctgctttct 442
           | ||||||||||||||||||||||||
Sbjct: 598 cgcttctacttgaccctctgctttct 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)