Query= MSMg01no261_i09.b1 MSMg01no261_i09.b1 CHROMAT_FILE:
MSMg01no261_i09.b1 PHD_FILE: MSMg01no261_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:56 2005
(527 letters)
>mm_chr9_31568861_31569788
Length = 928
Score = 741 bits (383), Expect = 0.0
Identities = 401/409 (98%), Gaps = 5/409 (1%)
Strand = Plus / Minus
Query: 120 tatacattatatttagaacatacaaacataatacatacacacacacacacacacacacac 179
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 928 tatacattatatttagaacatacaaacataatacat----acatacacacacacacacac 873
Query: 180 acacaagagtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacctgcatgtgttt 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 872 acacaagagtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcacctgcatgtgttt 813
Query: 240 atctgtaccatatatgtacagtttctattagaggccagaagagggtgtcaggttccttgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atctgtaccatatatgtacagtttctattagaggccagaagagggtgtcaggttccttgt 753
Query: 300 actggacttttggtatgaactgcctggcctgaataatctatactgaaaaacctttattga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 actggacttttggtatgaactgcctggcctgaataatctatactgaaaaacctttattga 693
Query: 360 aaagagtatgactttttcatgattactattctaaggaggaaaatatatgaatagttttat 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 692 aaagagtatgactttttcatgattactattctaagtaggaaaatatatgaatagttttat 633
Query: 420 taataaaaatatctgctataatatatacactggagatatttggg-aaactgaggagagaa 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 632 taataaaaatatctgctataatatatacactggagatatttgggaaaactgaggagagaa 573
Query: 479 aaagtgtggggttagataggaactcattttatacctgatcattcccaaa 527
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaagtgtggggttagataggaactcattttatacctgatcattcccaaa 524
Score = 76.1 bits (39), Expect = 6e-18
Identities = 54/59 (91%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 156 acacacacacacacacacacacacacaca-agagtgtatgtgtgtgtgtgtgtgtgtgt 213
||||||||||||||||||||||||||||| | | | | |||||||||||||||||||||
Sbjct: 831 acacacacacacacacacacacacacacatacactct-tgtgtgtgtgtgtgtgtgtgt 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_i09.g1 MSMg01no261_i09.g1 CHROMAT_FILE:
MSMg01no261_i09.g1 PHD_FILE: MSMg01no261_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:56 2005
(547 letters)
>mm_chr9_31434008_31434957
Length = 950
Score = 1002 bits (518), Expect = 0.0
Identities = 541/550 (98%), Gaps = 3/550 (0%)
Strand = Plus / Plus
Query: 1 atacctggaactataaacttacccgactgccaatgggtggagaggtcatagaccctagag 60
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atacccggaactataaacttacccgactgccgatgggtggagaggtcatagaccctagag 260
Query: 61 gaggacctactgagacagcagaaggtagacagactgcctgctaggccgagagatagggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggacctactgagacagcagaaggtagacagactgcctgctaggccgagagatagggtg 320
Query: 121 atgcctaggtaatgactgactagatgacaggtcatgactaggtaatgaatttggccaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcctaggtaatgactgactagatgacaggtcatgactaggtaatgaatttggccaatt 380
Query: 181 ttcaagatgaccagcttcttcctgaacctcctgacttgagacaaaaaccctgacagtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaagatgaccagcttcttcctgaacctcctgacttgagacaaaaaccctgacagtgtt 440
Query: 241 tgtctcccaacagcaggccctctgctgatggactgcgtcagagttcaggacttgatcaga 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tgtctcccaacagcaggccctctgctgatggactgggtcagagttcaggacttgatcaga 500
Query: 301 acatgtcacacaatcaatacaatatcatacctgtcttcaaactgacagatcctaagcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgtcacacaatcaatacaatatcatacctgtcttcaaactgacagatcctaagcagg 560
Query: 361 agaggagaactcttcagtctttaaaaccgccagtcctcaggaagagactggatttcagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaggagaactcttcagtctttaaaaccgccagtcctcaggaagagactggatttcagtc 620
Query: 421 cctcccaccacctcctcccccactttgggtctttttatgtgcgtttgttgcatgcacctg 480
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 cctcccactacctcctcccccactttgggtctttttatgtgtgtttgttgcatgcacctg 680
Query: 481 tttccctacc---ccccccccataaatatcctccttcaactgctgattgtggtgtttgcg 537
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tttccctacctccccccccccataaatgtcctccttcaactgctgattgtggtgtttgcg 740
Query: 538 atttctctgc 547
||||||||||
Sbjct: 741 atttctctgc 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 950
Length adjustment: 10
Effective length of query: 537
Effective length of database: 940
Effective search space: 504780
Effective search space used: 504780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
