BAC Information

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BAC

Clone NameMSMg01-261I22
Chromosome9 (Build37)
Map Location 39,543,509 - 39,544,200
singlet/doubletsinglet
Overlap genenone
Upstream geneLoh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1
Downstream geneOlfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261I22.T7 (MSMg01no261_i22.b1)MSMg01-261I22.TJ (MSMg01no261_i22.g1)
ACCAG403910AG403911
length743742
length of high quality
(start - end)		697 (45 - 741)671 (69 - 739)
definitionCHROMAT_FILE: MSMg01no261_i22.b1 PHD_FILE: MSMg01no261_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:58 2005CHROMAT_FILE: MSMg01no261_i22.g1 PHD_FILE: MSMg01no261_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAATACGCGGAA
TTCCTAAATTAAGGTATCTGTGAATAACAGGTATATCTAAGCCATCTGCC
TCCATTTGTGTTCTATTGCAGAGGAGTTTGTTCATGCTTGGTCTCAAACA
CTTGAAGGCTAGGTATTATTACTTTGTTTTCAGTTTTTTAGAACTCTATG
TACCTTACTTGCAATACTCTCACTTCCTCTATTTATGAATATTTCAGATT
AAAATATGCATATTATTCACAAGAGACCTCAACCAATACTACTGGAGGAC
TCCTATGGAAATTTAATTTACAAATGAAATAAAAATCCTTTGCATTTTTA
TTCAGTATTGAATCAGAGCTTTTATTTTGGTAATTAATTGAGAAAATAAT
ATAAGACATTTTTATGTATAAAGCAAACATGGAGTGTCTTCTTATAAGTA
ATGTTGCTCTATATAGAAAATTCTAAACGGTATAAATACCCAAATGTATA
TCTATTGAAGTAGTGCATAAAGTTAGTAAGGATGTTCAAAAGAGATCAAG
AGAAAACTCAAGAATCATACAATGTATTTCAAATATGTAATTTTGTAAAA
TTCTTGTGAGTAAAAACATAAGTCACAGTAGTTGAAAGGAGTTAGAGCTA
TGTAAATGGAATTCAAAGTTTCAGCATTCTAAAAATGAACAAAAAACCTA
AAATGTCATACAAATTCAGTGTAATTTCTGTGAACTCACGACN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCGCCATTCTTAGCCAGAGCAATTCGACAACAAAAGGAG
ATCAAAAGGATACAAATTGGAAAAGATGAAGTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAAC
TCCTAAACCTGATAAACAGCTTCGGTGAAATAGCTGGATATAAAATTAAC
TCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAA
AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAAT
ATCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAAC
TTCAAGTCCCTGAAGAAAGAGATTAAAGAAGATCTCAGAAGATGGAAAGA
TCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCT
TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACT
CAATTCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAA
CAAAAAACCTAGGATAACAAAAGCTCTTCTCAAGGATAAAAGTACCTCTG
GTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATA
ATAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_i22.b1 MSMg01no261_i22.b1 CHROMAT_FILE:
MSMg01no261_i22.b1 PHD_FILE: MSMg01no261_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:58 2005
         (697 letters)



>mm_chr9_39543307_39544402
          Length = 1096

 Score = 1286 bits (665), Expect = 0.0
 Identities = 686/693 (98%), Gaps = 1/693 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcctaaattaaggtatctgtgaataacaggtatatctaagccatctgcctccatt 62
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ggaattcctaaattaaggaatatgtgaataacaggtatatctaagccatctgcctccatt 835

                                                                       
Query: 63  tgtgttctattgcagaggagtttgttcatgcttggtctcaaacacttgaaggctaggtat 122
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 834 tgtgttctattgcagaggagtttgttcatgcttggtctcaaacaattgaaggctaggtat 775

                                                                       
Query: 123 tattactttgttttcagttttttagaactctatgtaccttacttgcaatactctcacttc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tattactttgttttcagttttttagaactctatgtaccttacttgcaatactctcacttc 715

                                                                       
Query: 183 ctctatttatgaatatttcagattaaaatatgcatattattcacaagagacctcaaccaa 242
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 714 ctctatttatgaatatttcagattaaaatatgcatatcattcacaagagacctcaaccaa 655

                                                                       
Query: 243 tactactggaggactcctatggaaatttaatttacaaatgaaataaaaatcctttgcatt 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 654 tactactggaggactcctatggaaatttaatttacaaatgaaataaaaatcctttgcact 595

                                                                       
Query: 303 tttattcagtattgaatcagagcttttattttggtaattaattgagaaaataatataaga 362
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttattcagtattgaataagagcttttattttggtaattaattgagaaaataatataaga 535

                                                                       
Query: 363 catttttatgtataaagcaaacatggagtgtcttcttataagtaatgttgctctatatag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 catttttatgtataaagcaaacatggagtgtcttcttataagtaatgttgctctatatag 475

                                                                       
Query: 423 aaaattctaaacggtataaatacccaaatgtatatctattgaagtagtgcataaagttag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaaattctaaacggtataaatacccaaatgtatatctattgaagtagtgcataaagttag 415

                                                                       
Query: 483 taaggatgttcaaaagagatcaagagaaaactcaagaatcatacaatgtatttcaaatat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taaggatgttcaaaagagatcaagagaaaactcaagaatcatacaatgtatttcaaatat 355

                                                                       
Query: 543 gtaattttgtaaaattcttgtgagtaaaaacataagtcacagtagttgaaaggagttaga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtaattttgtaaaattcttgtgagtaaaaacataagtcacagtagttgaaaggagttaga 295

                                                                       
Query: 603 gctatgtaaatggaattcaaagtttcagcattctaaaaatgaacaaaaaacctaaaatgt 662
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 294 gctatgtaaatggaattcaaagtttcagcattctaaaaatgaac-aaaaacctaaaatgt 236

                                            
Query: 663 catacaaattcagtgtaatttctgtgaactcac 695
           |||||||||||||||||||||||||||||||||
Sbjct: 235 catacaaattcagtgtaatttctgtgaactcac 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1096
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1086
Effective search space:   746082
Effective search space used:   746082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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