Query= MSMg01no261_j21.b1 MSMg01no261_j21.b1 CHROMAT_FILE:
MSMg01no261_j21.b1 PHD_FILE: MSMg01no261_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:02 2005
(574 letters)
>mm_chr9_87203286_87204259
Length = 974
Score = 1017 bits (526), Expect = 0.0
Identities = 560/572 (97%), Gaps = 2/572 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaaaacttgtttccaacaaaatacctcactgaacaagtacaggcctgacgccc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaaacttgggaccaacaaaatacctcactgaacaagtacaggcctgacgccc 264
Query: 65 aggactgtcctctggaccccgaataatgaattgagttttagaaacttgcagatgagtgga 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggactgtcctctggacgtagaataatgaattgagttttagaaacttgcagatgagtgga 324
Query: 125 agggatgattttatagatataatgcacaggatggtctggggtgagaggatggaatgtgca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggatgattttatagatataatgcacaggatggtctggggtgagaggatggaatgtgca 384
Query: 185 aatattatacagcatgacaactctacatggaaaaatctccaatgatccctcccatcagag 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 aatattatacagcatgacaactctacatggaaaaatctccaataatccctcccatcagag 444
Query: 245 ctcaggggaccctatggaggaggaggcagagagcaaagatccagaggggatggaggcacc 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ctcaggggaccctatggaggaggaggcagagagcaaagagccagaggggatggaggcacc 504
Query: 305 aggagaacaagtctctctaaatcaactgagcacggcacatatgagctcacagaaactgaa 364
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 505 aggagaacaagtctctctaaatcaactgagtaaggcacatatgagctcacagaaactgaa 564
Query: 365 gcagcagggacagggcctacacccatctgcaccaggacttctatgaatatttcatagttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagcagggacagggcctacacccatctgcaccaggacttctatgaatatttcatagttt 624
Query: 425 tcagtttagtttttttatgggactcccgagtgcatggatgagtgggtctctgagtttcgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcagtttagtttttttatgggactcccgagtgcatggatgagtgggtctctgagtttcgt 684
Query: 485 gctgtctctctagctcttttccttctattggtttgccttatctaaatttgatgtgatgat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctgtctctctagctcttttccttctattggtttgccttatctaaatttgatgtgatgat 744
Query: 545 ct--ttttgttattttactatattttattttg 574
|| ||||||||||||||||||||||||||||
Sbjct: 745 ctctttttgttattttactatattttattttg 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_j21.g1 MSMg01no261_j21.g1 CHROMAT_FILE:
MSMg01no261_j21.g1 PHD_FILE: MSMg01no261_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:03 2005
(626 letters)
>mm_chr9_87361898_87362923
Length = 1026
Score = 971 bits (502), Expect = 0.0
Identities = 520/532 (97%), Gaps = 10/532 (1%)
Strand = Plus / Minus
Query: 95 gatcaaataggcttcatccaagggatgcagaggtggtttaatttatgaaaatccatcaac 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 gatcaaataggcttcatccaagggatgcagaggtggtttaatttatgaaaatccatcaac 967
Query: 155 aaaatccatcatataaacaaatagaaagaaaaaactcacatcattgactcataagaacct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 aaaatccatcatataaacaaatagaaagaaaaaactcacatcattgactcataagaacct 907
Query: 215 gtggtgtaagtatttttatcattagtgttgcaaacatgaaaaaaaaagaactatctggac 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gtggtgtaagtatttttatcattagtgttgcaaacatgaaaaaaaaagaactatctggac 847
Query: 275 atgagaaggctaactaaaatgcccaatgtcacactgcttgtaatggacagagttggggct 334
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 846 atgagaaggctaactaaaatgcccaaagtcacactgcttgtaatggacagagttggggct 787
Query: 335 tgaacccaggccacctcacctcttcaccagaacattatgcccagaacaaaataagcagcc 394
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgaactcaggccacctcacctcttcaccagaacattatgcccagaacaaaataagcagcc 727
Query: 395 tagggactactgctgaatcctgtttaatagcatgctattagctttgcaaattgtcaggga 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tagggactactgctgaatcctgtttaatagcatgctattagctttgcaaattgtcaggga 667
Query: 455 tactacaacttttccaaaataaaaatgaaaaatatacccacttgctgccttccacaacac 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tactacaacttttccaaaataaaaatgaaaaatatacccacttgctgccttccacaacac 607
Query: 515 aaacttataaaaatgtccacaattcaaaatgtcatgaagaaggaatactaatatatatat 574
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaacttataaaaatgtccacaattcaaaatgtcatgaagaaggaatacta---------- 557
Query: 575 atatatatatatatatatatatatatatatatatatatggacacatcgatca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atatatatatatatatatatatatatatatatatatatggacacatcgatca 505
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 565 atatatatatatatatatatatatatatatatatatat 602
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 567 atatatatatatatatatatatatatatatatatatat 604
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 569 atatatatatatatatatatatatatatatatatatat 606
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 571 atatatatatatatatatatatatatatatatatatat 608
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 573 atatatatatatatatatatatatatatatatatatat 610
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 575 atatatatatatatatatatatatatatatatatatat 612
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 9
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
