BAC Information

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BAC

Clone NameMSMg01-261L01
Chromosome9 (Build37)
Map Location 71,684,595 - 71,685,016
singlet/doubletsinglet
Overlap genenone
Upstream geneLipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261L01.T7 (MSMg01no261_l01.b1)MSMg01-261L01.TJ (MSMg01no261_l01.g1)
ACCAG404003AG404004
length743743
length of high quality
(start - end)
425 (45 - 469)374 (75 - 448)
definitionCHROMAT_FILE: MSMg01no261_l01.b1 PHD_FILE: MSMg01no261_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:08 2005CHROMAT_FILE: MSMg01no261_l01.g1 PHD_FILE: MSMg01no261_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCACTTGTTTATCCATCTTCTGATATGTTACTTCCTTGGTTTGCT
TTCTTTAGAGGGGAGGAATTGGAACCCCCTACTATGCCCCATGAACCTAC
TATGTGTCACTTACCTCCTCAGTAGTCAGCACAGCTATCTTGAAGAAGCT
CAGAGTCTGGTCAGCTGATGGGTTGCTAAATCACATCTCCTTTCTACCCC
AGTTGCCTCCCACCCCCCAATCACCATTGGTAAAGAGTTGGGCATAGCTC
AAAAATGTTACAAAGTGTCTACTTCCTGGCTGCAGGAAACGTCTCCATTT
TGGGGGTTCTCGGCAAGTTTCAGGACACTGAATTCTCTAGAGACATGTGT
ATAGAGAGTAGGAATGTCAAAACATGGCCCTTGATTTGGCCTCTGTGCAT
GAGGGGCCAGGAGTGAAGCAAAACTAGAGAAGCACACAAGTCCACATGAA
CTGCACAGGTTTGGACCCAGCAGGAAACATTAAGGTGCTAGGACATGTTT
AACTGGTCCTGCCTCCCACTTCCGGTTCCTCCCTCTTTCCCCTGCATAGA
ATGTCATCAGTCCTTGTATCACGAATAGTCCCTTTGTGTTTTTTTCCTTT
CTTCCTGTGCCTACCTTATGATTTCCGCTTTGGCAAACATGGTTTATTAA
CCTCTTGTCAGTCAGGGTGGTATCTTCGCTACTCCCTGTTAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGTAAAACTCTTAGAGCTAAGGGC
TAGAGAGATGACTCAGTGGTTAAGAGCACATATGCTCTTGAAGAAGAAAG
AGCCAAGTCCATTTTCAGGCACATAAATCAGATGGTTCACAAGTACCTTT
AACTCCAGTCCCAGGGAGTCCAGTTCCCTCTTTTGGACACACGAGGTTGA
GTAACCTGAGGTTTTGATCTTAGCCATTCTGAGTGGTGTAAGGTGGAATC
TCAGGGTCATTTTGATTTATGTTTCTCTGGTCACTAAGGACTTTGAACAT
TTCTTTAGGTTCTTCTCCACCATTCAAGATTCCTCAGTTGTGAATTCTCT
ATTTCATTCTATACCCCATTTTTTGATTGGATTGTCTGTATTTTTGGCGA
CTAGCTTCTTGAGTTCCTCACATTCTTCGGATATTAGCCCTCTATTGGAT
GTGTCGTTAGTGAAGATTTTTTACCACTCTGTAGGTTGCCGATTTGCCTC
ATCCACTATGTCCTTGGCCCTAACGCCTCCTGAGGTCTCATTTATCAATT
ACTTGATACTAGATCCTTGACTCATTGGAGTCCTCGTTCACGAATACTTT
CCCCCGTGCGCCTTGCATCCCAGGCTCCTTTTCCATCTTTCGCCTCCACC
TAAAACTCGCAAGCCTCCCGGAATCAATGGTTTGTGGTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_l01.b1 MSMg01no261_l01.b1 CHROMAT_FILE:
MSMg01no261_l01.b1 PHD_FILE: MSMg01no261_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:08 2005
         (425 letters)



>mm_chr9_71684391_71685216
          Length = 826

 Score =  704 bits (364), Expect = 0.0
 Identities = 408/426 (95%), Gaps = 9/426 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcacttg---tttatccatcttctgatatgttacttccttggtttgctttctt 61
           ||||||||||||||   ||    |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcacttggaatt----catcttctgatatgttacttccttggtttgctttctt 260

                                                                       
Query: 62  tagaggggaggaattggaaccccctactatgccccatgaacctactatgtgtcacttacc 121
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tagaggggaggaattggaagttcctactatgccccatgaacctactatgtgtcacgtacc 320

                                                                       
Query: 122 tcctcagtagtcagcacagctatcttgaagaagctcagagtctggtcagctgatgggttg 181
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tcctcagtagtcagcacagctatcttgaagaagctcatagtctggtcagctgatgggttg 380

                                                                       
Query: 182 ctaaatcacatctcctttctaccccagttgcctcccaccccccaa-tcaccattggtaaa 240
           |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||
Sbjct: 381 ctaaatcacatctcctttctaccccagttgcctcccaccccggaaatcaccattggtaaa 440

                                                                       
Query: 241 -gagttgggcatagctcaaaaatgttacaaagtgtctacttcctggctgcaggaaacgtc 299
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 agagttgggcatagctcaaaaatgttacaaagtttctacttcctggctgcaggaaacgtc 500

                                                                       
Query: 300 tccattttgggggttctcggcaagtttcaggacactgaattctctagagacatgtgtata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccattttgggggttctcggcaagtttcaggacactgaattctctagagacatgtgtata 560

                                                                       
Query: 360 gagagtaggaatgtcaaaacatggcccttgatttggcctctgtgcatgaggggccaggag 419
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagtaggaatgtcaaaacatgggccttgatttggcctctgtgcatgaggggccaggag 620

                 
Query: 420 tgaagc 425
           ||||||
Sbjct: 621 tgaagc 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 826
Length adjustment: 9
Effective length of query: 416
Effective length of database: 817
Effective search space:   339872
Effective search space used:   339872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)