BAC Information

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BAC

Clone NameMSMg01-261L10
Chromosome9 (Build37)
Map Location 36,593,110 - 36,593,601
singlet/doubletsinglet
Overlap geneEi24
Upstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a
Downstream geneLOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261L10.T7 (MSMg01no261_l10.b1)MSMg01-261L10.TJ (MSMg01no261_l10.g1)
ACCAG404021AG404022
length722728
length of high quality
(start - end)
533 (46 - 578)476 (75 - 550)
definitionCHROMAT_FILE: MSMg01no261_l10.b1 PHD_FILE: MSMg01no261_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:10 2005CHROMAT_FILE: MSMg01no261_l10.g1 PHD_FILE: MSMg01no261_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGAACCGCGGA
ATTCTCACCTGATTTACCCGAATGGCAGAGAAACACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
GTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AACTGGACATAGTACTACCGGAGTGATCCAGCAATACGTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAATATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGATATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCCTTAA
GAATGAAAACTGAAGTGTGGAC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTCACATCAATTTTCAGTGCTCT
TTGGGTGCTCCCCCTGTTTGTGCTTAGCAAAGTTGTGAATGCCATTTGGT
TCCAAGTAGGTGCAGGACAAAATGGAACTGGGTTCTACATGCTGGGTTGA
CTAGGTTACACATTTTAGCCTATGACGTTAGTGGCCTATAAAACTTAATC
CAAGCAGTCAGGTAATATTTGTGGTTTTGTAAAATGAAATTACTGTCTTG
GGTTACTGAGACAGACTTTTCTCACCTGGCAGTTCTAGCAGCAAACCAGT
GGCCTTAACTCTGGGGATGAACACTGGGATTATTTAATCCATATTTTGCT
ATATTATTGTTCTTTGTTTCAGGATATAGCTGACTTGGCATTTGAAGTAT
CAGGGAGGAAACCTCATCCATTCCCCAGTGTCAGCAAAATAATTGCTGAC
ATGCTCTTCAACCTTTTGCTACAGGCACTTTTCCTTATTCAGGTGAGAGA
CACATGGAGACATTTTTAAAAAGAAAAGGATAGTTAGTGGGACGGGGCTT
TCACCAAGATAGGCTTTTTGCATCTATTCCTAAGATGGGGACTATGCATA
TATGCCTCATTGGCAAGTAATGAATTTTAAAGCACCTCTGTGTGTTGTTA
GGCAATTTCCTTTTAACAATTTTTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_l10.g1 MSMg01no261_l10.g1 CHROMAT_FILE:
MSMg01no261_l10.g1 PHD_FILE: MSMg01no261_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:10 2005
         (476 letters)



>mm_chr9_36592740_36593615
          Length = 876

 Score =  878 bits (454), Expect = 0.0
 Identities = 475/492 (96%), Gaps = 16/492 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctcacatcaattttcagtgctctttgggtgctccccctgtttgtgcttagcaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ttcctcacatcaattttcagtgctctttgggtgctccccctgtttgtgcttagcaaagtt 803

                                                                       
Query: 61  gtgaatgccatttggttccaagtaggtgcaggacaaaatggaactgggttctacatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gtgaatgccatttggttccaagtaggtgcaggacaaaatggaactgggttctacatgctg 743

                                                                       
Query: 121 ggttgactaggttacacattttagcctatgacgttagtggcctataaaacttaat----- 175
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
Sbjct: 742 ggttgactaggttacacattttagcctatgaagttagtggcctataaaacttaatcctta 683

                                                                       
Query: 176 -----------ccaagcagtcaggtaatatttgtggttttgtaaaatgaaattactgtct 224
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acgtttttaagccaagcagtcaggtaatatttgtggttttgtaaaatgaaattactgtct 623

                                                                       
Query: 225 tgggttactgagacagacttttctcacctggcagttctagcagcaaaccagtggccttaa 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgggttactgagacagacttttctcacctggcagttctagcagcaaaccagtggccttaa 563

                                                                       
Query: 285 ctctggggatgaacactgggattatttaatccatattttgctatattattgttctttgtt 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctctggggatgaacactgggattatttaatccatattttgctatattattgttctttgtt 503

                                                                       
Query: 345 tcaggatatagctgacttggcatttgaagtatcagggaggaaacctcatccattccccag 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcaggatatagctgacttggcatttgaagtatcagggaggaaacctcatccattccccag 443

                                                                       
Query: 405 tgtcagcaaaataattgctgacatgctcttcaaccttttgctacaggcacttttccttat 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtcagcaaaataattgctgacatgctcttcaaccttttgctacaggcacttttccttat 383

                       
Query: 465 tcaggtgagaga 476
           ||||||||||||
Sbjct: 382 tcaggtgagaga 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)