BAC Information

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BAC

Clone NameMSMg01-262E11
Chromosome9 (Build37)
Map Location 7,151,137 - 7,151,784
singlet/doubletsinglet
Overlap geneDync2h1
Upstream genePdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, LOC100039658
Downstream geneDcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262E11.T7 (MSMg01no262_e11.b1)MSMg01-262E11.TJ (MSMg01no262_e11.g1)
ACCAG404426AG404427
length726744
length of high quality
(start - end)
535 (47 - 581)649 (71 - 719)
definitionCHROMAT_FILE: MSMg01no262_e11.b1 PHD_FILE: MSMg01no262_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:53 2005CHROMAT_FILE: MSMg01no262_e11.g1 PHD_FILE: MSMg01no262_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGAATCCGCG
GAATTCAATAACTCACTTCCAGAGATACAGGAGAACACTGCTAAAGAGTT
ACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCC
TTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAA
ACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGATAACCCAAAG
TGAGGCAACGCTGGAGATAGAAATCCTAGGAAAGAAATCTGGAACCATAG
ATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGT
GCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAA
ATGCAAAAAGATCCTAACTAAAAACATCCAGGAAATCCAGGACACAATGA
GAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAA
CTCAAAGGACCAGCATACATCTTCAACAAAATTATTGAAGAAAACTTCCC
AAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTC
CCAATAGACTGGACCAGAAAAGAAATTCCTCCCGACATATAATAATCATA
ACATCAAATGCACTAAATAAAGATAGACTACCTAAAAGAGTAAGGAAAAA
AAGGCAAGTAACATATAAGGGCAAGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGATCTTCCTTTGCCGCTCCCTCCCAACT
GCTATGCCAGCAAACCCAGTCCTAAGGAGATGTGTAAGCCAGATGTCAAG
GCATTATCAAAGGATTACCTGTAAAAACCTAGACACAAGCCAAGTACATT
AACTCATGGTGCTGGTGACACATGCTTATAGTCCCAGGCACTCAAGAACG
CGTGGCAGGGAAACTGCTAATTCCAAGACAGACTGAAATTTAATGAGATC
ATGTCTTAAAATAAAAACTAAAAATGACTGGGGAGTAGCTCAGGGGTAGA
GCCATTACCTAGCATGTATAAGGTACTGGGTTTACTCCTCTGTACAATAA
AAATAAACAGGTAGGTAGGCAGGTAGACAGGCATGATAGATAGCTATTTC
TACATCTCAAAATCTCAGGATTGCTATATTCTAGAAAAAATTTCCCTGAC
TTTGTCTCAAATCAGGACAAGAGTCAATACCTTCTGAATCCCTACACTTA
GTTTACTGTCTAGTGCAGAATCTATTCCATTCAGCATTAACAACAATTAA
AAACCATTAACAACTTTTGAAAACATTGTCTGTCCCAGTAATATATAGGC
AAATTACTCCATATAATCATTAATACTATTACTTTCTTTGGCAGTATCTT
TAAAGTGGAAGAAATTGTGGTTCATAATTTAAATTGATGCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_e11.g1 MSMg01no262_e11.g1 CHROMAT_FILE:
MSMg01no262_e11.g1 PHD_FILE: MSMg01no262_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:53 2005
         (649 letters)



>mm_chr9_7150937_7151985
          Length = 1049

 Score = 1195 bits (618), Expect = 0.0
 Identities = 642/650 (98%), Gaps = 3/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatcttcctttgccgctccctcccaactgctatgccagcaaacccagtcctaaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatcttcctttgccgctccctcccaactgctatgccagcaaacccagtcctaaggaga 260

                                                                       
Query: 61  tgtgtaagccagatgtcaaggcattatcaaaggattacctgtaaaaacctagacacaagc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtaagccagatgtcaaggctttatcaaaggattacctgtaaaaacctagacacaagc 320

                                                                       
Query: 121 caagtacattaactcatggtgctggtgacacatgcttatagtcccaggcactcaagaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtacattaactcatggtgctggtgacacatgcttatagtcccaggcactcaagaacg 380

                                                                       
Query: 181 cgtggcagggaaactgctaattccaagacagactgaaatttaatgagatcatgtcttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtggcagggaaactgctaattccaagacagactgaaatttaatgagatcatgtcttaaa 440

                                                                       
Query: 241 ataaaaactaaaaatgactggggagtagctcaggggtagagccattacctagcatgtata 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ataaaaactaaaaatgactggggagtagctcaggggtagagcaattacctagcatgtata 500

                                                                       
Query: 301 aggtactgggtttactcctctgtacaataaaaataaacaggtaggtaggcaggtagacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtactgggtttactcctctgtacaataaaaataaacaggtaggtaggcaggtagacag 560

                                                                       
Query: 361 gcatgatagatagctatttctacatctcaaaatctcaggattgctatattctagaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatgatagatagctatttctacatctcaaaatctcaggattgctatattctagaaaaaa 620

                                                                       
Query: 421 tttccctgactttgtctcaaatcaggacaagagtcaataccttctgaatccctacactta 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 tttccctgactttgtctcaaatcaggacaagagtcaataccatctgaatccctacactta 680

                                                                       
Query: 481 gttta-ctgtctagtgcagaatctattccattcagcattaacaacaattaaaaaccatta 539
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 gtttagc-gtctagtgcagaatctattccattcagcattaacaacaattaaaa-ccatta 738

                                                                       
Query: 540 acaacttttgaaaacattgtctgtcccagtaatatataggcaaattactccatataatca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acaacttttgaaaacattgtctgtcccagtaatatataggcaaattactccatataatca 798

                                                             
Query: 600 ttaatactattactttctttggcagtatctttaaagtggaagaaattgtg 649
           ||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 799 ttaatactattactttccttggaagtatctttaaagtggaagaaattgtg 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)