BAC Information

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BAC

Clone NameMSMg01-262L03
Chromosome9 (Build37)
Map Location 38,562,751 - 38,563,286
singlet/doubletsinglet
Overlap geneOlfr920
Upstream geneOlfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a
Downstream geneOlfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262L03.T7 (MSMg01no262_l03.b1)MSMg01-262L03.TJ (MSMg01no262_l03.g1)
ACCAG404726AG404727
length733786
length of high quality
(start - end)
691 (43 - 733)102 (89 - 190)
definitionCHROMAT_FILE: MSMg01no262_l03.b1 PHD_FILE: MSMg01no262_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:24 2005CHROMAT_FILE: MSMg01no262_l03.g1 PHD_FILE: MSMg01no262_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCACAATGAGAATAATTAAAGTCAAATTCCCCAATGCAGTTATCATG
TACATTAATAGAAAGACCACGAACAGGGGTACTTGAAGGTCAGGCTGGTC
TGTTAATCCCAAGAGAATGAATTCTGTTACCACAGAGCCATTTATCAAAG
CCATACTTCTATAAGATATCTTGTGAAATATAAATAAATGGTGAATTAAA
GGATCATGAAGATCTCTAATCCTGAAAGTGGGGCTGTCAAATCCTAGATG
GCTACAATCAAAGTCAAGGGAAAAGCAAGAAGTATGATGCACACAACAGC
ATCTCCCTTATCTTATCTTCCTATTTTTTTTTGTTTTGTTTTGTTTTATC
ATCTCTGTGACACAAGTAGAAACTCTACTAACTGAATTTTACAATCCATC
CAGACTGAACTCTGGATGTGTTAGAACCATGAACACTGTTTCTAATTTAA
ACAAAATAACCAGAATCTAGGAATGGTGAGCATTCTGCTATGCTCACATT
AAGTTCTATGGTGTAAGAACTGTACATGCAGAGTGAACTTACTAATTTAA
GCACCACAACAGAAGTATTTACTAACTCTGGAAAACACTTTGACTTGGCC
ATGCATCTGGAAATTTCTTTGGAATCATAGGACTTTACAAAATGAGAAGA
AAATGGCACAGCTCTGGTTCTTGGACTGTATCN
TTTTCCTATTATCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATTTAGTTC
TATACTCCATTTTTTGATTGGGTTGTTTTGCTTTTTGGTGATTAGCTTCT
TGAGTTCTTTATATATTTTGGATATCAGCCTTCTATCAGATGTGAGGTTA
GTGAAGATATTTTTCCCAATTTTAAGTTGGCCCATTTGGTACTAGTGACT
ATGTCCTCTGCCTTACCGACGCTTTCTAGCTTTATGCGTTCCCATTTAAT
CAACCCCTTGATCTTATAGCATGATCCCTTACAGTTCTTGTTTAAGTAAT
TCCCCCCTGAAGGCAACGAGTTCAAGGTTCCTTCCCCATTTTCTTTGTCC
ATTAAAAATCAGGGGACTGGGGTTAGCTGCTTTGTTTTTTTCTCCCCCCT
AATTTTTGTTGTTTAGTAAATATTCCTTTCCCAATTGGATACTATTTTTT
TCTATCTTTTTTCCCCCCCTCCTCCTTTATTTTTTTTTTTTATAATCTCA
ACCCCCACCTTATTTCGAGAATATGTTTTTTTTTTTTCTCCCCCGCCCCG
GCGATTTTGTCATTATTACCATCCTTTATTACTAAACTATATATATCCCT
ACACCCCCCCCCTCATTTTTTGTTTTTCTTCTTCTCTTATTTCCTCCCAT
ACGTAGATTTTTCTCCTTTTTATTTAATGTTTTCCCCTCCTTCTTTCCAC
TCCCCCTTATTTTTTTTTTCTCCTTTCTTTTCATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_l03.b1 MSMg01no262_l03.b1 CHROMAT_FILE:
MSMg01no262_l03.b1 PHD_FILE: MSMg01no262_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:24 2005
         (691 letters)



>mm_chr9_38562196_38563286
          Length = 1091

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/540 (98%), Gaps = 4/540 (0%)
 Strand = Plus / Minus

                                                                        
Query: 151  tatcaaagccatacttctataagatatcttgtgaaatataaataaatggtgaattaaagg 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tatcaaagccatacttctataagatatcttgtgaaatataaataaatggtgaattaaagg 1032

                                                                        
Query: 211  atcatgaagatctctaatcctgaaagtggggctgtcaaatcctagatggctacaatcaaa 270
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1031 atcatgaagatctctaatcctgagagtggggctgtcaaatcctagatggctacaatcaaa 972

                                                                        
Query: 271  gtcaagggaaaagcaagaagtatgatgcacacaacagcatctcccttatcttatcttcct 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  gtcaagggaaaagcaagaagtatgatgcacacaacagcatctcccttatcttatcttcct 912

                                                                        
Query: 331  atttttttttgttttgttttgttttatcatctctgtgacacaagtagaaactctactaac 390
            |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  atttttt----ttttgttttgttttatcatctctgtgacacaagtagaaactctactaac 856

                                                                        
Query: 391  tgaattttacaatccatccagactgaactctggatgtgttagaaccatgaacactgtttc 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  tgaattttacaatccatccagactgaactctggatgtgttagaaccatgaacactgtttc 796

                                                                        
Query: 451  taatttaaacaaaataaccagaatctaggaatggtgagcattctgctatgctcacattaa 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  taatttaaacaaaataaccagaatctaggaatggtgagcattctgctatgctcacattaa 736

                                                                        
Query: 511  gttctatggtgtaagaactgtacatgcagagtgaacttactaatttaagcaccacaacag 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  gttctatggtgtaagaactgtacatgcagagtgaacttactaatttaagcaccacaacag 676

                                                                        
Query: 571  aagtatttactaactctggaaaacactttgacttggccatgcatctggaaatttctttgg 630
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 675  aagtatttactaactctggaaaacactttgtcttggccatgcatctggaaatttctttgg 616

                                                                        
Query: 631  aatcataggactttacaaaatgagaagaaaatggcacagctctggttcttggactgtatc 690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  aatcataggactttacaaaatgagaagaaaatggcacagctctggttcttggactgtatc 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)