BAC Information

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BAC

Clone NameMSMg01-262N03
Chromosome9 (Build37)
Map Location 91,221,303 - 91,221,662
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039777, LOC100039925, EG434428, LOC621576
Downstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2, 1700057G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262N03.T7 (MSMg01no262_n03.b1)MSMg01-262N03.TJ (MSMg01no262_n03.g1)
ACCAG404816AG404817
length732757
length of high quality
(start - end)
370 (45 - 414)318 (76 - 393)
definitionCHROMAT_FILE: MSMg01no262_n03.b1 PHD_FILE: MSMg01no262_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:33 2005CHROMAT_FILE: MSMg01no262_n03.g1 PHD_FILE: MSMg01no262_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGTAGGATTAACTAAGAATAAGCTTTAAACTCTTTAAAGTTTT
GTTTTTTTTTTTTTAATTATCTCGTGGTCATAGAACGATGTCTGTTTGGG
TAGCTATGCTCTCTTGTGATCCTGCCATTTTACTTTCCTAGTGATTTGAA
TCAGATACTGTAGTCTTCAATCACTCAGGCACCATTCTTAGTCATGGACT
GTGTCACAGCCCGTCAACTTCAAGAGATGGTTGAAGTGGAAATTTCTGGT
TTCTTTGGAGACTCAGTTCTGTCACATGATGTTTTTCTGGAAGCTGTCTT
ATGAGAGGATGTTTTGACGACGCACGCATGTGAGAGGGCGCTTTGCTGAT
CACAGACACGTGCCCCCCTTCTAGAAGCTGTCTTGTGAAAGCGCATGTGA
CGTTTTGCTGGAGCAGATGCTTGAGAGGACACGTGATGCTTGGGAAAGGT
AGAAGACTATCCCAACAGACAGTTGCTCTGCCTCTGTGCTGCTTCTCTGG
TCTCCGCCGAGCTGTCCTTTACTGATGCTGTTTCGACTTTATTCATTTTC
GCTTTTTTCCTAACCTTGCTCAATCGTCTACTGCCCCCAGACTTTCTCCC
GCACTCCTTTTTGTTTGTATTCTTTCCCCATTTTTTTCTTTTTCATACCC
TCTTCCAATACTAATTTATCCTTCTTGCCTTA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTGAGAT
CAAAAACTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
TGCTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TAAGTCTGGTGGTTCCTCAGAAAACTGTATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGA
AGGTCACATGCTCCACTATGTTCACCCCCCCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAATAT
GTGGTACATCCACCCCGCGCAGTACTAATCAGCTATTACCAAGAATGATT
TTATGAAATTCCTATTCTTTTGGATGGACCTGTGGCTTCACATCCTGAGT
GAGGTGAACCATTCCAAAATGCCACTCACCCCCATACGGACTTTCTTGAT
ATACTGCAATTTTTACTCACTACTTTTTTATTATCCGTAGTTATATATAG
TATTCCACTTTTTTTTTTAACCTCCGCTATTTTCTTAAATTCTACTTTCT
CTAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_n03.b1 MSMg01no262_n03.b1 CHROMAT_FILE:
MSMg01no262_n03.b1 PHD_FILE: MSMg01no262_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:33 2005
         (370 letters)



>mm_chr9_91221226_91221995
          Length = 770

 Score =  665 bits (344), Expect = 0.0
 Identities = 356/360 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatagtaggattaactaagaataagctttaaactctttaaagttttgttttttt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 gaattccatagtaggattaactaagaataagctttaaactctttaaagtttttttttttt 378

                                                                       
Query: 65  ttttttaattatctcgtggtcatagaacgatgtctgtttgggtagctatgctctcttgtg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttttttaattatctggtggtcatagaacgatgtctgtttgggtagctatgctctcttgtg 318

                                                                       
Query: 125 atcctgccattttactttcctagtgatttgaatcagatactgtagtcttcaatcactcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atcctgccattttactttcctagtgatttgaatcagatactgtagtcttcaatcactcag 258

                                                                       
Query: 185 gcaccattcttagtcatggactgtgtcacagcccgtcaacttcaagagatggttgaagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcaccattcttagtcatggactgtgtcacagcccgtcaacttcaagagatggttgaagtg 198

                                                                       
Query: 245 gaaatttctggtttctttggagactcagttctgtcacatgatgtttttctggaagctgtc 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 197 gaaatttctggtttctttggagactcagttctgtcacgtgatgtttttctggaagctgtc 138

                                                                       
Query: 305 ttatgagaggatgttttgacgacgcacgcatgtgagagggcgctttgctgatcacagaca 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 137 ttatgagaggatgttttgacgacgcaggcatgtgagagggcgctttgctgatcacagaca 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)