NCCATCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATTTTTCATAATGCTTTTGAATTAATATCAACACAACT
TAGCTATTTTATAGAAGGGCTTATAAACCTATAGCTACTGTTCAGTATTT
TGCCTCTCAAAGTGCATCAGGTCAGTGGCTTCCCAGGCCTAAGAAGCTGT
CATCACTCTTTGAGCACATCCTTTCCTCACAAAAAAAGGATGCTCCTCAC
TCACTTTCACTCTTCTGCCATGGCCCTAGACACAGCCATTTCTGAGGGGT
ACTGGCTCCTTTAGATAGAGAATGGTATACAGATGCCAAAATCTAGACAG
AAGGAATGGTACCAGGGTTCTGTGGCTTTCAGACTCTGTGAGCAGACCGT
GGGTGACACGGGGATATATACACATCCCCACATGCCCTAGTTATAGCTAT
GTACTTCCTACTAGTATTTTGAACGATGAATTCAAACTAATATCTCCATG
CAACACTGTAAGATTCTTTCTAGTTTCCTTTCTTCTGTATTTATAATTTT
CTTCTTCAAAGTCAGATACCATCAATCTGTAATATATTTTAATTACTTGG
TCAACCTCTTTGTATATAACCAATTGTTACTTGCTATCTGGAGCTCACTA
ATTTTCAGCTAGTCTGGCAAGCCAGCTTGCTCTGAGGACCTCTAATCTTC
ATTTTCTAAGGTGATAAATGCAGTAAGGTGCCATGGCCTGCA

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCACCACACATGCATAGCATGAA
TCTATCAATGGAGGAGACACCTGGCACCTCCCAAGTAAAGAGCATCTGTA
AAGAGAACAGTGGTTAGAGAACAGCAGGGCCATAAATGGCGAAGTGAGGT
TTTTTTATGCTTGTTTGTTTTGTTTTACTGGTTTTGAGACAGGTTTCTCT
ATGTAGCCTTGGAAGTCCTAGACTCTTCAAACTCACTATGTAGACAGTGA
TACACCTGCCTCTGCCTAAGTGCTAGGATTCAAGGTGTGCGCCACTACGA
CTGGCTAGGGTGACTGATGGTGCTTTTGCTTTGTTTTTCCATTTTAGGGC
TCTTTATTGCCAAGGAGCCTATTGCAGTACAGTGGCTGGATTTCTGTTAC
CTGCAGTAAAATTTTATCCTAAGACTGTCACGTCTTCTTTCTTTAAAAAA
AAATCCTATTTTATGTGTATGAGGTTTTGCCTGCGTCTATGTATGTGCAC
CATGTGCGTGCCTGGTGCTGCCCATAGAGGCCAGAGAGAACACCAGATCC
CCTAGAATAGGAGTTCTAGATGGGCTTAGTCACTGGGAATCAAATTCAAG
CCCTCTGAAAGGGCAGCAAGTGGTCCTTAATTTTTTTTCTTTTGGAGGGG
AGCAAGGTTCTCATGCATGAAGTAACCTTAAGCAGGCCCTTGGACTTGCC
CTGTCAGCC

Query= MSMg01no263_d01.b1 MSMg01no263_d01.b1 CHROMAT_FILE:
MSMg01no263_d01.b1 PHD_FILE: MSMg01no263_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:02 2005
         (686 letters)



>mm_chr9_71809824_71810909
          Length = 1086

 Score = 1288 bits (666), Expect = 0.0
 Identities = 678/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatttttcataatgcttttgaattaatatcaacacaacttagctattttataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatttttcataatgcttttgaattaatatcaacacaacttagctattttataga 264

                                                                       
Query: 65  agggcttataaacctatagctactgttcagtattttgcctctcaaagtgcatcaggtcag 124
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 agggcttataaatctatagctactgttcagtattttgcctcacaaagtgcatcaggtcag 324

                                                                       
Query: 125 tggcttcccaggcctaagaagctgtcatcactctttgagcacatcctttcctcacaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggcttcccaggcctaagaagctgtcatcactctttgagcacatcctttcctcacaaaaa 384

                                                                       
Query: 185 aaggatgctcctcactcactttcactcttctgccatggccctagacacagccatttctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggatgctcctcactcactttcactcttctgccatggccctagacacagccatttctga 444

                                                                       
Query: 245 ggggtactggctcctttagatagagaatggtatacagatgccaaaatctagacagaagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggtactggctcctttagatagagaatggtatacagatgccaaaatctagacagaagga 504

                                                                       
Query: 305 atggtaccagggttctgtggctttcagactctgtgagcagaccgtgggtgacacggggat 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 atggtaccagggttctgtggctttcagactctgtgagcagaccgtgggtgacacagggat 564

                                                                       
Query: 365 atatacacatccccacatgccctagttatagctatgtacttcctactagtattttgaacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatacacatccccacatgccctagttatagctatgtacttcctactagtattttgaacg 624

                                                                       
Query: 425 atgaattcaaactaatatctccatgcaacactgtaagattctttctagtttcctttcttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgaattcaaactaatatctccatgcaacactgtaagattctttctagtttcctttcttc 684

                                                                       
Query: 485 tgtatttataattttcttcttcaaagtcagataccatcaatctgtaatatattttaatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtatttataattttcttcttcaaagtcagataccatcaatctgtaatatattttaatta 744

                                                                       
Query: 545 cttggtcaacctctttgtatataaccaattgttacttgctatctggagctcactaatttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttggtcaacctctttgtatataaccaattgttacttgctatctggagctcactaatttt 804

                                                                       
Query: 605 cagctagtctggcaagccagcttgctctgaggacctctaatcttcattttctaaggtgat 664
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagctagtctggctagccagcttgctctgaggacctctaatcttcattttctaaggtgat 864

                                 
Query: 665 aaatgcagtaaggtgccatggc 686
           ||||||||||||||||||||||
Sbjct: 865 aaatgcagtaaggtgccatggc 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)