BAC Information

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BAC

Clone NameMSMg01-263I14
Chromosome9 (Build37)
Map Location 39,543,583 - 39,544,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLoh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1
Downstream geneOlfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263I14.T7 (MSMg01no263_i14.b1)MSMg01-263I14.TJ (MSMg01no263_i14.g1)
ACCAG405329AG405330
length746747
length of high quality
(start - end)		703 (44 - 746)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no263_i14.b1 PHD_FILE: MSMg01no263_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:29 2005CHROMAT_FILE: MSMg01no263_i14.g1 PHD_FILE: MSMg01no263_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTTACATACCTCTAACTCCTTTCAACTACTGTGACTTATGTTTTT
ACTCACAAGAATTTTACAAAATTACATATTTGAAATACATTGTATGATTC
TTGAGTTTTCTCTTGATCTCTTTTGAACATCCTTACTAACTTTATGCACT
ACTTCAATAGATATACATTTGGGTATTTATACCGTTTAGAATTTTCTATA
TAGAGCAACATTACTTATAAGAAGACACTCCATGTTTGCTTTATACATAA
AAATGTCTTATATTATTTTCTCAATTAATTACCAAAATAAAAGCTCTGAT
TCAATACTGAATAAAAATGCAAAGGATTTTTATTTCATTTGTAAATTAAA
TTTCCATAGGAGTCCTCCAGTAGTATTGGTTGAGGTCTCTTGTGAATAAT
ATGCATATTTTAATCTGAAATATTCATAAATAGAGGAAGTGAGAGTATTG
CAAGTAAGGTACATAGAGTTCTAAAAAACTGAAAACAAAGTAATAATACC
TAGCCTTCAAGTGTTTGAGACCAAGCATGAACAAACTCCTCTGCAATAGA
ACACAAATGGAGGCAGATGGCTTAGATATACCTGTTATTCACATATTCCT
TAATTTAGGAATTCCTTTTTTCATCATCTAACATGCACAAGTTATTGTCA
GAGATATGGTGGTGTCTGTCCCCAAATACTTAAATTCTGTATTATA

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAATTTCTTTTTTTCTGCTT
TTTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTATCCCAAAAG
TCCCCCATGCCACCCTCCAACTCCCCTACCCACCCACTCCTACTTCTTGG
CCCTGGTGTTCTCCTGTACTGAGGTATATAAAGTTTGCAAGGCCAATGGG
CCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATATATAACTAG
AGACACGAGCTCCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCT
ATAGGGTTGCAGATTCCTTTAGCTCCTCGCCCACTTTCTCTAGCTCCTCT
ATTGGGGGCCTTGTGATCCATTCAATAGCTGACTGTGAGCATCCACTTCT
GTGTTTGCTAGTCCCAAGAATAGCCTCACAAGAGGCAGCTTGAAATTTCT
TTTTAACAGTGCTTTCATTGTGCCCCATAAGTTTGGGTATTCTGTGCCTT
TATTTTCATTGAATTCTAGGAAGCCATTAATTGCTTTCCATTTTTATTCC
CTGACCAAAGGATCATTGCCGAATAGTATGTTGTTCAGCTTCCATGGCTA
TGTGGTCTTTATGTTGTTTTTGCCGCTGTGTATTTCCCCATTTTTCTCTT
TCGCTCTGACCCATTGCCTTCCCTTTTCCCCTTCTTCTTGCGCCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_i14.b1 MSMg01no263_i14.b1 CHROMAT_FILE:
MSMg01no263_i14.b1 PHD_FILE: MSMg01no263_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:29 2005
         (703 letters)



>mm_chr9_39543379_39544481
          Length = 1103

 Score = 1305 bits (675), Expect = 0.0
 Identities = 693/699 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatttacatacctctaactcctttcaactactgtgacttatgtttttactcaca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttacatagctctaactcctttcaactactgtgacttatgtttttactcaca 264

                                                                       
Query: 65  agaattttacaaaattacatatttgaaatacattgtatgattcttgagttttctcttgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaattttacaaaattacatatttgaaatacattgtatgattcttgagttttctcttgat 324

                                                                       
Query: 125 ctcttttgaacatccttactaactttatgcactacttcaatagatatacatttgggtatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcttttgaacatccttactaactttatgcactacttcaatagatatacatttgggtatt 384

                                                                       
Query: 185 tataccgtttagaattttctatatagagcaacattacttataagaagacactccatgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tataccgtttagaattttctatatagagcaacattacttataagaagacactccatgttt 444

                                                                       
Query: 245 gctttatacataaaaatgtcttatattattttctcaattaattaccaaaataaaagctct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctttatacataaaaatgtcttatattattttctcaattaattaccaaaataaaagctct 504

                                                                       
Query: 305 gattcaatactgaataaaaatgcaaaggatttttatttcatttgtaaattaaatttccat 364
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattcaatactgaataaaagtgcaaaggatttttatttcatttgtaaattaaatttccat 564

                                                                       
Query: 365 aggagtcctccagtagtattggttgaggtctcttgtgaataatatgcatattttaatctg 424
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 aggagtcctccagtagtattggttgaggtctcttgtgaatgatatgcatattttaatctg 624

                                                                       
Query: 425 aaatattcataaatagaggaagtgagagtattgcaagtaaggtacatagagttctaaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatattcataaatagaggaagtgagagtattgcaagtaaggtacatagagttctaaaaa 684

                                                                       
Query: 485 actgaaaacaaagtaataatacctagccttcaagtgtttgagaccaagcatgaacaaact 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 actgaaaacaaagtaataatacctagccttcaattgtttgagaccaagcatgaacaaact 744

                                                                       
Query: 545 cctctgcaatagaacacaaatggaggcagatggcttagatatacctgttattcacatatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctctgcaatagaacacaaatggaggcagatggcttagatatacctgttattcacatatt 804

                                                                       
Query: 605 ccttaatttaggaattccttttttcatcatctaacatgcacaagttattgtcagagatat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 805 ccttaatttaggaattccttttttcatcatctaacatgcacaagttattgtcagagaaat 864

                                                  
Query: 665 ggtggtgtctgtccccaaatacttaaattctgtattata 703
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ggtggtgtctgtccccaaatacttaaattctgtattata 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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