BAC Information

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BAC

Clone NameMSMg01-263N21
Chromosome9 (Build37)
Map Location 122,381,378 - 122,381,691
singlet/doubletsinglet
Overlap genenone
Upstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5
Downstream geneLOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263N21.T7 (MSMg01no263_n21.b1)MSMg01-263N21.TJ (MSMg01no263_n21.g1)
ACCAG405572AG405573
length758732
length of high quality
(start - end)
320 (47 - 366)341 (383 - 723)
definitionCHROMAT_FILE: MSMg01no263_n21.b1 PHD_FILE: MSMg01no263_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:54 2005CHROMAT_FILE: MSMg01no263_n21.g1 PHD_FILE: MSMg01no263_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCATGGGCAGCAATTCGGCAAATGAATGTTAATATTTTATTCA
GAAATATTTTAACCATGTAACCGAAATTATGTTAAATGCTGTGAGTGTTA
AAAGAATAGTCATAGGTCTAGAGAAAGAGCTTTGCCATTAAGGATCTAGG
TTCGATTTACAGCACCCTCATAATGGCTCACACCACCCAAAAGGGGGAGA
GAGAAACCACCATGGATTAGGTGAGTCATAAAAACAGAGCCCTTTGGGCT
GGCCAATTGGAGTTAAGAGCAGCCCAGACGAAACATGGTAAGTAATAACT
CGGGGTTATGGATGAGATTTTATATTCTACCCCCCCACACTGTATATATC
TGCCCTGCTCTTGTGCTGACTACCCATTATTGTAAATGCAAAGTCCTGTG
TATCTTCTATCTGGGAACTAAATGGTTAAAGGTGGGGTAGAAACCTTGAA
TTGGGATTAAAATTTTCTACAACACTTCCGGGGTATTTGATCCCTTCTTT
TGGCCTCCTTGGCACCAGACATGCATGTGGAGCGCATACATGCAGACAGA
ACACACATACATATAATATAAAATAAATAAATCTAAAAAAAGATGCTCAC
CCAGATGTGTCCACTCTATGACAGGAGATCACATGTATGCTTCACAACAC
AAATACCTTAATTTAAAGCATTGTCAGATTTTTGGCGATTTTTCTAAAAA
CCGGGTCT
CCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGACGCGGGTAGAAAGGCCA
GCTGGGATGCCCCCAAAGTCTGGGCACTAAGACTCTATCGATCCACAGGG
ACCGACCCGGTGACCCGGTTCTCTTTGACCCGCCAGGTCCTCAATGTAGG
ACCCCGCGTCCCCATTGGGCCTAATCCCGTGATCACTGACCAGCTACCCC
CATCCCAACCCGTGCAGATCATGCTCCCCAGGCCTCCTCATCCTCCTCCT
TCAGGCACGGTCTCTATGGTACCTGGGGCTCCCCCGCCTTCTCAACAACC
TGGGACGTGTGATAGTTTGCTCCCCCCCCCCCAAGGAGCCTACCAAGCAC
TCAACCTCACCAGTCCCGACAAAACCCAAAAAAGCTGGCTGTGTCTGGTA
TCGGGACCCCCCTACTACGAAGGGGTTGCCGTCCTAGGTACCTACTCCAA
CCATACCTCTGCCCCAGCTAACTGCTCCGTGGCCTCCCAACACAAGCTGA
CCCTGTCCGAAGTGACCGGACAGGGACTCTGCGTAGGAGCAGTTCCCAAA
ACCCATCAGGCCCTGTGTAATACCACCCAGAAGACGAGCGACGGGTCCTA
CTATCTGGCTGCTCCCGCCGGGACCATCTGGGCTTGCAACACCGGGCTCA
CTCCCTGCCTATCTACTACTGTACTCAACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_n21.b1 MSMg01no263_n21.b1 CHROMAT_FILE:
MSMg01no263_n21.b1 PHD_FILE: MSMg01no263_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:54 2005
         (320 letters)



>mm_chr9_122381360_122382079
          Length = 720

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatgggcagcaattcggcaaatgaatgttaatattttattcagaaatatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaattcttcatgggcagcaattcggcaaatgaatgttaatattttattcagaaatatttt 273

                                                                       
Query: 65  aaccatgtaaccgaaattatgttaaatgctgtgagtgttaaaagaatagtcataggtcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaccatgtaaccgaaattatgttaaatgctgtgagtgttaaaagaatagtcataggtcta 213

                                                                       
Query: 125 gagaaagagctttgccattaaggatctaggttcgatttacagcaccctcataatggctca 184
           |||||||| ||||||||||||||||| |||||||||||||||||||||||| | | ||||
Sbjct: 212 gagaaagaactttgccattaaggatccaggttcgatttacagcaccctcatgacgactca 153

                                                                       
Query: 185 caccacccaaaagggggagagagaaaccaccatggattaggtgagtcataaaaacagagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 caccacccaaaagggggagagagaaaccaccatggattaggtgagtcataaaaacagagc 93

                                                                       
Query: 245 cctttgggctggccaattggagttaagagcagcccagacgaaacatggtaagtaataact 304
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ccttagggctggcctattggagttaagagcagcccagacgaaacatggtaagtaataact 33

                         
Query: 305 cggggttatggatg 318
           ||||||||||||||
Sbjct: 32  cggggttatggatg 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)