NAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACCACCACCACCAACAGTAGAGACTCAAAAAACATCTCA
CTTGGTACATTTGCACTGTTGGTATTTTAGAAAGCCCTGGTTAATGTGCA
TCCTGGTCCAAATCTCAAAAATCAATCAATCAATCAATCAATCAATCAAT
CAATCAGTCAATCAATTAATCTCAGGAATTTTTCTGTAAAAAATAGCAAA
ACAAAACAAAACAATGAAGGTACACATTTGTCTTCATGGGTCAATAAATG
AAGCTCTCTGGAGGCTAGCCCATCCTGATAGGAAATATCATTTGATCTTT
TTTTCTAATTGGGTATTTATTTCATTTACATTTCCAAAGCTATCCCAAAA
GTCCCCCACACGCTCCCCCACCCAGTCCCCCACCCACCCACTCCCACTTC
TTGGCCCTGTCATTCCCCTGTACTGAGGCATATAAAGTTTGCACGACTAA
TGGGCCTCTCTTTCCACTGGTGGCCGACCAGGCCATTTTCTGATTCATAT
GCAGCTAGAGACAGGAGCTCTGAGGTGTACTGGTTAGTTCATATTGTTGT
TCCACCTATAGGATTGCAGATCCCTTTAGCTCCTCGGTTACTTTCTCTAG
CTCCTCCATTGGGGGCCCTGTGCTCCATCCAATAGCTGACTGTGAGCATC
CACTTCATTTGACCTTTTAAAACTTTGCTTGTGGGGCTTATG

CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTGGTATTTTGTTAGGATAATAAAA
GTACTGACTTTTTTTTCTTTCCCTTTTTCTTTTCTTTTTTCTTATTTAGT
AAATCCTAACACAATTGTTCTCAACCTTCCCAATGCTGCAAGAGTTCAAT
AATGTTCTTAGGGTTATCATGATGCCTCCAACCATTAAATTATTTTCTTG
CTATTTCAGAAATGTAAGTTTGACACTGTTAGGAATTGTAGTGTAAACAT
CTGATATGTGGGAGGATATGTTGAACTACTGATCTAAAGATAACCTAAAG
AGCAGGAGATTTTTATGGTGCACTTATTATAAAATGCAGCATGTTTTCCC
CATATTCCAACTCACCACTGTGTAAGCATCATACCTTTTGTAAAGTTAAC
TAACTAAAAGGTAGAAGTAAAATTTCAGCAGAAAAATATTCTTAAATTAT
TCTAGTGCAAGTAGAGGTAAATCAGTAAATCACTCAGACAAACACAGCTC
TTAAGTCTTAACACAATTTTCTAGAACATTGTATAAAATCTATGACTAAT
TAGTGGATTCTAGAACCACTGAAGTCACAAAATAAAGAAGAATATATACC
ACAAAATATCAGACTGACCGAATATATGATAATTCATCTTACTCCACTAT
TTAAGCTCTAACCAGATTGGCTAATGTGTTTACATTGTGAAAN

Query= MSMg01no263_p01.b1 MSMg01no263_p01.b1 CHROMAT_FILE:
MSMg01no263_p01.b1 PHD_FILE: MSMg01no263_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:00 2005
         (688 letters)



>mm_chr9_4777246_4778333
          Length = 1088

 Score = 1108 bits (573), Expect = 0.0
 Identities = 646/687 (94%), Gaps = 27/687 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccaccaccaccaacagtagagactcaaaaaacatctcacttggtacatttgc 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccaccaccaccaccagtagagactcaaaaaacatctcacttggtacatttgc 264

                                                                       
Query: 65  actgttggtattttagaaagccctggttaatgtgcatcctggtccaaatctcaaaaatca 124
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgttggtattttagaaagcactggttaatgtgcatcctggtccaaatctcaaaaatca 324

                                                                       
Query: 125 atcaatcaatcaatcaatcaatcaatcaatcagtcaatcaattaatctcaggaatttttc 184
           |||||||||||||||||||                        |||||||||||||||||
Sbjct: 325 atcaatcaatcaatcaatc------------------------aatctcaggaatttttc 360

                                                                       
Query: 185 tgtaaaaaatagcaaaacaaaacaaaacaatgaaggtacacatttgtcttcatgggtcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtaaaaaatagcaaaacaaaacaaaacaatgaaggtacacatttgtcttcatgggtcaa 420

                                                                       
Query: 245 taaatgaagctctctggaggctagcccatcctgataggaaatatcatttgatc---tttt 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 421 taaatgaagctctctggaggctagcccatcctgataggaaatatcatttgatcttttttt 480

                                                                       
Query: 302 tttctaattgggtatttatttcatttacatttccaaagctatcccaaaagtcccccacac 361
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttttaattgggtatttatttcatttacatttccaaagctatcccaaaagtcccccacac 540

                                                                       
Query: 362 gctcccccacccagtcccccacccacccactcccacttcttggccctgtcattcccctgt 421
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 541 gctcccccacccagtcccccacccacccactcccacttcttggccctgtcgtccccctgt 600

                                                                       
Query: 422 actgaggcatataaagtttgcacgactaatgggcctctctttccactggtggccgaccag 481
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 601 actgaggcatataaagtttgcacgactaatgggcctctctttccattggtggccaaccag 660

                                                                       
Query: 482 gccattttctgattcatatgcagctagagacaggagctctgaggtgtactggttagttca 541
           ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 661 gccattttctgattcttatgcagctagagacaggagctctggggggtactggttagttca 720

                                                                       
Query: 542 tattgttgttccacctataggattgcagatccctttagctcctcggttactttctctagc 601
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 721 tattgttgttccacctataggattgcagatccctttagctccttgggtactttctctagc 780

                                                                       
Query: 602 tcctccattgggggccctgtgctccatccaatagctgactgtgagcatccacttcatttg 661
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tcctccattgggggccctgtggtccatccaatagctgactgtgagcatccacttcatttg 840

                                      
Query: 662 accttttaaaactttgcttgtggggct 688
           |||||||||||||||||||||||||||
Sbjct: 841 accttttaaaactttgcttgtggggct 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)