BAC Information

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BAC

Clone NameMSMg01-264C06
Chromosome9 (Build37)
Map Location 96,499,795 - 96,662,701
singlet/doubletdoublet
Overlap geneRasa2, Zbtb38, EG622512
Upstream genePcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174
Downstream geneLOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C06.T7 (MSMg01no264_c06.b1)MSMg01-264C06.TJ (MSMg01no264_c06.g1)
ACCAG405770AG405771
length735876
length of high quality
(start - end)
302 (434 - 735)291 (125 - 415)
definitionCHROMAT_FILE: MSMg01no264_c06.b1 PHD_FILE: MSMg01no264_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:15 2005CHROMAT_FILE: MSMg01no264_c06.g1 PHD_FILE: MSMg01no264_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,499,795 - 96,500,096)(96,662,411 - 96,662,701)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTATTTCTCCAGAGTACACGTCACTGAAAGACAGCACAGTGC
TGTGACTAGGAGTTAGGCAGATCTCTAATGGGATCACAGCTTCTATGACT
AAGTCCTTTAATCCTATTAATATAATCTGCAAAATGAGGTTAATATACCT
ACCTCATAGTGCTACTATGGGCCTTAAATGAGATAATGTATATTAAGTAC
TCACGGCTATACTTGGTACATATTTTATAATTACTAAAAGTAATCATTAG
ATTGAGTCCTGGCTAAATGTAATCTCATTGCTTTCTATACTGCCATCTAT
TTTTATTTTTGTATTCTTTACCCCAACTCCCCCACTTATACAGGGTAAAC
AAACAAAACCTGAGTAGGCTCTATATAAAATTCAAGCTGTTTTCAAATCT
TTTATACTCACAAGGCTAGTGTGGTATTTTCAGATTGTTTGTGGCTAAAT
AATAATATTCCCAATGATAGCATATTACCCTGAAAAGTATCATCCCTCCC
TCCCACCTCCTACAGCATTCTTCTTTTAAAATCTATTTTAAGTAGTGGGT
AAGTCTTACTAATTACCATTTAAGATAAGAGTTCTGGAAAGGCTAATGAC
TAATGGGCATGGAAGCAAACAGTACTAAAAATTTAAATGCCGATACTATA
TATAAAACACAATGGCTTTATAGATACACTGTCAG
AAAAAAAAATAAAAATAAATAAATATTGTCTTCCCTTCACTNNNTCACGA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCAACCAGCTCTGCAGAGACAGTG
ATGCAAGTGAGGGCATGGGCTGGGAGGCCAATGCAAACCATTTCTTGGCT
GCAAATAAGAACACTGAGCCACAATGGCTTACATGACAGAGACATGCTGT
CTTGTCATCTTGACAGGAAATCTCGAGATAGATTAGTCTGACATTGGACC
ATGGAGTCAAACAAGAGAGGGAAGACAAGAGAATGAAGGCCAAGAAAAAC
GTGACCCTTGTATTTTACAAGATCCCCAGAAACCTTCAACTGCCATGTTC
TAGTTACAGGGAAGATGTTTTTTATATCACCCACCCCCCCAACGGAGGAA
CTGGAATATGGGAACTCATAGAACCAGGCACGGTAGAGCAGATTGGCACC
GTGATCAGATGATCAGATGATAGATGCACTGCTAGCAGTAAGTTAGACAC
TCGAATGTGGGTGTTGTCCTCAACTTAACATTGTCACGATGGTAAAGCAT
GAATAGTGAAAAAAAAAAAAACCCCCAACGATGGAAATTCAATTTCCGAA
TCAAGAATACCTTCTGTTTAACATGCAACGGCCAAAAGATAATGAACCCT
TAGATTTCCATTTAATGAAAAGTGACCCACCTTATACATCTTCAACATTT
TTGGGTTAATTATAAAATACATTGGTATTCTTCGCTTTTAAATGTTCATA
ATAGACTCCACATGTTCCAAAGTAGTGCGCAAAAGAGGCCACAATACTTG
GCTAAATAAATCATAATACTTTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c06.b1 MSMg01no264_c06.b1 CHROMAT_FILE:
MSMg01no264_c06.b1 PHD_FILE: MSMg01no264_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:15 2005
         (302 letters)



>mm_chr9_96499595_96500296
          Length = 702

 Score =  530 bits (274), Expect = e-155
 Identities = 295/302 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagctgttttcaaatcttttatactcacaaggctagtgtggtattttcagattgtttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctgttttcaaatcttttatactcacaaggctagtgtggtattttcagattgtttgtg 260

                                                                       
Query: 61  gctaaataataatattcccaatgatagcatattaccctgaaaagtatcatccctccctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gctaaataataatattcccaatgatagcatattaccctgaaaagtattatccctccctcc 320

                                                                       
Query: 121 cacctcctacagcattcttcttttaaaatctattttaagtagtgggtaagtcttactaat 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacctcctacagcatttttcttttaaaatctattttaagtagtgggtaagtcttactaat 380

                                                                       
Query: 181 taccatttaagataagagttctggaaaggctaatgactaatgggcatggaagcaaacagt 240
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 taccatttaagataaaagttctggaaaggctaatgactaatgggcacggaagcaaacagt 440

                                                                       
Query: 241 actaaaaatttaaatgccgatactatatataaaacacaatggctttatagatacactgtc 300
           ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 actaaaaatgtaaatgccaatactatatataaaacataatggctttatagatacactgtc 500

             
Query: 301 ag 302
           ||
Sbjct: 501 ag 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_c06.g1 MSMg01no264_c06.g1 CHROMAT_FILE:
MSMg01no264_c06.g1 PHD_FILE: MSMg01no264_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:15 2005
         (291 letters)



>mm_chr9_96662211_96662901
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccaaccagctctgcagagacagtgatgcaagtgagggcatgggctgggaggccaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tcccaaccagctctgcagagacagtgatgcaagtgagggcatgggctgggaggccaatgc 432

                                                                       
Query: 61  aaaccatttcttggctgcaaataagaacactgagccacaatggcttacatgacagagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaaccatttcttggctgcaaataagaacactgagccacaatggcttacatgacagagaca 372

                                                                       
Query: 121 tgctgtcttgtcatcttgacaggaaatctcgagatagattagtctgacattggaccatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgctgtcttgtcatcttgacaggaaatctcgagatagattagtctgacattggaccatgg 312

                                                                       
Query: 181 agtcaaacaagagagggaagacaagagaatgaaggccaagaaaaacgtgacccttgtatt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtcaaacgagagagggaagacaagagaatgaaggccaagaaaaacgtgacccttgtatt 252

                                                              
Query: 241 ttacaagatccccagaaaccttcaactgccatgttctagttacagggaaga 291
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttacaagatcctcagaaaccttcaactgccatgttctagttacagggaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)