BAC Information

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BAC

Clone NameMSMg01-264N12
Chromosome9 (Build37)
Map Location 73,171,324 - 73,171,571
singlet/doubletsinglet
Overlap genenone
Upstream geneSuhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneUnc13c, Wdr72
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264N12.T7 (MSMg01no264_n12.b1)MSMg01-264N12.TJ (MSMg01no264_n12.g1)
ACCAG406278AG406279
length788842
length of high quality
(start - end)
66 (62 - 127)248 (124 - 371)
definitionCHROMAT_FILE: MSMg01no264_n12.b1 PHD_FILE: MSMg01no264_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:08 2005CHROMAT_FILE: MSMg01no264_n12.g1 PHD_FILE: MSMg01no264_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGGGGATCTGACACCCTCTTCTGGCTTTGGCATTTGTG
TATATATGTACATGTGTGTGTGTGNATGNGNGNANGNGNGNGNGGGNNGG
GNGNGNGNGNGNNGGGGNGGGGAAAAGGGGGGNGGGGGGAAAAAAAAAAA
GAAAAAAAGAAAAAAAAAAGAAAAAANGAAGAAAAAAAGAATTTTTTTAA
AAAAAATTAATAAAAAAAAGAATAATTATAGGGTATAAGAAATGAAGAAG
AAAATTTTTTTTTTTTAAGAAGAGGAAAAAGAAAAAAGAGAAAAGAATTT
TGAATAAATTCCAAANGAACGGTAGCCCAAAAAAAGAGGGAGGGGGGGGG
GGGGGGGGGGGAGAAAAAAAATNAGNAAAAAANNGGGTGGGGGGGGGGGG
GGTTATTTATTAAATAAGGTATTTTTTTGAGTAATAGATAATATATTTTA
TTTTTTTTTATGTTAAAGAATGGTATTAATTAAAAATTTTAGATTTATAA
AGTTTGTTTTATATAAAGAAAATAATTTATTATTTTAAATATAAATATAA
TATAAGAAGATGATAATTATTTTTTTTTATTATTAATAGAATTATATATT
ATTTTAATTTGAGAGTGATAATATTATANGTATTTTTTGTATATAGTGGA
GTTAAAATTTTTTTTAAATTGATATGGAAATTTATTTTTTAGATATTNAG
TTTATTTATTAAAATTTAAGTAATATTACATAGATTAN
GTTTTTTTTTNTGGTTTTNNCCCTCCTCTTTTTTAATTATTTTNNTATCT
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCAGGAAACACGAACTTTTATTAATG
AACATCTAGGTGATCATCATGTCACTGATATGTTAACCACATTATCTCTT
CAAAAATTTCGTTAACAGTCAATTGGTTATGTAAAGCAAAAAATTACTAT
AGAGCAGAGTCTGTAAGAGATTTAAATTTTTGAATTTTAAAAAAGGAGGG
AGAAATGAGATTTGTAGTCCCACAAGATACTTATACATAAAATGATAGAA
TATTATTTTAATTTTTCCTCATTTTTAGTGTGAAAACTGTGAACATTCTA
AACCCATGGTTTAGAATTAATTTACCNNAACGAGGNCCCCATTAATAACT
CAGTAGGAGATAAAGCAGAAAAAGCTCAATAAAACAAAACTTAAATAATG
CTCATTGATTTAAAAATAACTCGAGAAGATATTAGAAGTAATTCTAAATA
AATTCAAATGAAAAACTAGCAAACTTCATGATATGCGGGTAAATTATTGT
TTAAAGCATAATCAGTTGCCTTCTGGTACAATTTTTTTAAAAATGAGATA
TAAGCTAATTGATCACAGAAGACAACCTTGAACCAGAGAATAATGAATTT
TTGACAAAATAGGGAAAAATATAATTAATCTATCAAGACAAAGTTTCTAT
TTTTGGAAAAGAATGTATTAAAATAACAATTCTTTAAACTTTAATTCTAA
CGAATGAAAATGAAATAACAATCCTGCTCGGTCGTAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_n12.g1 MSMg01no264_n12.g1 CHROMAT_FILE:
MSMg01no264_n12.g1 PHD_FILE: MSMg01no264_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:09 2005
         (248 letters)



>mm_chr9_73171124_73171771
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggaaacacgaacttttattaatgaacatctaggtgatcatcatgtcactgatatgt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 448 tccaggaaacacgaacttttattaatgaacatctaagtgatcatcatgtcactgatatgt 389

                                                                       
Query: 61  taaccacattatctcttcaaaaatttcgttaacagtcaattggttatgtaaagcaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taaccacattatctcttcaaaaatttcgttaacagtcaattggttatgtaaagcaaaaaa 329

                                                                       
Query: 121 ttactatagagcagagtctgtaagagatttaaatttttgaattttaaaaaaggagggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttactatagagcagagtctgtaagagatttaaatttttgaattttaaaaaaggagggaga 269

                                                                       
Query: 181 aatgagatttgtagtcccacaagatacttatacataaaatgatagaatattattttaatt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 268 aatgagatttgtagtcccacaagatacttatacatgaaatgatagaatattattttaatt 209

                   
Query: 241 tttcctca 248
           ||||||||
Sbjct: 208 tttcctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)