BAC Information

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BAC

Clone NameMSMg01-264P21
Chromosome9 (Build37)
Map Location 118,235,903 - 118,386,564
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264P21.T7 (MSMg01no264_p21.b1)MSMg01-264P21.TJ (MSMg01no264_p21.g1)
ACCAG406381AG406382
length743749
length of high quality
(start - end)
319 (45 - 363)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no264_p21.b1 PHD_FILE: MSMg01no264_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:20 2005CHROMAT_FILE: MSMg01no264_p21.g1 PHD_FILE: MSMg01no264_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,235,903 - 118,236,215)(118,386,277 - 118,386,564)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACATCAGGTTAAAGGCTGCTGACACAGGGGTGTTTGGTTAGCAG
CCTGCCCCAAGGGCTTCATGTGCACAGCGACAAAGCCGCTCACCCTCCCT
CCCCAGCCCAAGTTTGGCAGTGGCCAGTCGCTCCTGCAAGCTGTGTGTGG
GGACAAAGCAGAAATCCATCCAGCTTTCACCTAAAAGTAAGTCAAGCCAA
AACAGAAGCCCCTGGTCTTCATTAAGGCCTCCCGCTTGGCCAAGCAGGCG
ACCATCTCCAGGTTCGTTTTGTATATCTCTCCCTCGAGTAATTGAAAGAG
CTTCTCTTTGCNTTAACCTTCCNAATGCCAAATCACCAGTCGNCCTTTCT
TCACATTCTCTGTGACTCGTCACTTTACTAAAAATGACAAAATAGAGCCC
CCCTGACAAGGATAGACAGATAACTGTTGTCTATCCATCCTGGGGGCCTA
GAAGTCTAAGACGGTGGTGTCAGTGAGGGGGGTGTCTTCCAAGGCCTCTC
CTTGGCTTGCAGACAGACATCTTTTCTCTGTGTTGTCAGGAGCTTATGTA
TGTCGCTACCCTAATACCACCTTATAGGAACACCAGCCATAATGGATTTG
AGTTCACATGTATGGCCTGATTTGATCCCAACTGCCTCTGTTAGCCCCAT
ATAGAGTCATGACAACCTCATAATACGGTTATAGGTGGCAGCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTGCTCGGTTTTTTCTAAACA
CTGGATGTTTCCTACCTCCCCCAGCCCCCGCTTTCGCCAACATCTTTGGT
GGGGACTGACACTAAGACACAAAGGTTCCCTAGCAGCTGTGCAGTTAAGA
TTCCCTGCGCCTCTCTGCGGCACAATACAGAAGGCAGAATAATTAGTGAA
ATAATCAGTTTGATATTGAATTAAGCTCCTTTGCTCCAGCTGCCTGTTTT
TCCCCCCTGCGTTTCCACAAACAGTCAAGGACGGGGCCGTCATATTTTAT
TGTTTTATTATTACTGAATGGGGAACACGTTTCGTTGACGATGAGAAGCC
TGTACATTCTCCTCTAATAAGCAATTACGGACGCCTGCAGTAGTCGCTCC
AGGAGCGCATTTTCCGGTCGAGATGTGGGGACTCTGCTTCCCCCAACCCA
ATGCAATCACACGGGAAACTTTTGCCGAGAACAGATGAGGTGGCCGCGGG
ATCTGCTAAGCGCTCAGACGCCAGCAGCAGATCCGCGCGATGCTTTCCAA
CCTGGGTCCAAACCCCGCGAATCACGAACGTGGGCACGCCCGGGTTAGGG
AGAGGTGCGATCCTTCATGGACTTGGTAGCCGTGCGATTAGTTTGAATCA
AACGGAAAGGCGTCTTGTTCTCTCACAAATGATTTCTACTATTTTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_p21.b1 MSMg01no264_p21.b1 CHROMAT_FILE:
MSMg01no264_p21.b1 PHD_FILE: MSMg01no264_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:20 2005
         (319 letters)



>mm_chr9_118235699_118236417
          Length = 719

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacatcaggttaaaggctgctgacacaggggtgtttggttagcagcctgcccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacatcaggttaaaggctgctgacacaggggtgtttggttagcagcctgcccc 264

                                                                       
Query: 65  aagggcttcatgtgcacagcgacaaagccgctcaccctccctccccagcccaagtttggc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 aagggcttcatgtgcacagcgacaaagccgctcaccctccctccccagcccaagcttggc 324

                                                                       
Query: 125 agtggccagtcgctcctgcaagctgtgtgtggggacaaagcagaaatccatccagctttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtggccagtcgctcctgcaagctgtgtgtggggacaaagcagaaatccatccagctttc 384

                                                                       
Query: 185 acctaaaagtaagtcaagccaaaacagaagcccctggtcttcattaaggcctcccgcttg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 acctaaaagtaagtcaagccaaaacagaagcccctggtcttcattaaggcctcccgctcg 444

                                                                       
Query: 245 gccaagcaggcgaccatctccaggttcgttttgtatatctctccctcgagtaattgaaag 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 gccaagcaggcgaccatctccaggttcgttttgtagatctctccctcgagtaattgaaag 504

                        
Query: 305 agcttctctttgc 317
           |||||||||||||
Sbjct: 505 agcttctctttgc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_p21.g1 MSMg01no264_p21.g1 CHROMAT_FILE:
MSMg01no264_p21.g1 PHD_FILE: MSMg01no264_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:20 2005
         (291 letters)



>mm_chr9_118386077_118386767
          Length = 691

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctgctcggttttttctaaacactggatgtttcctacctcccccagcccccgctttcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cctctgctcggttttttctaaacactggatgtttcctacctcccccagcccccgctttcg 429

                                                                       
Query: 61  ccaacatctttggtggggactgacactaagacacaaaggttccctagcagctgtgcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ccaacatctttggtggggactgacactaagacacaaaggttccctagcagctgtgcagtt 369

                                                                       
Query: 121 aagattccctgcgcctctctgcggcacaatacagaaggcagaataattagtgaaataatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagattccctgcgcctctctgcggcacaatacagaaggcagaataattagtgaaataatc 309

                                                                       
Query: 181 agtttgatattgaattaagctcctttgctccagctgcctgtttttcccccctgcgtttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agtttgatattgaattaagctcctttgctccagctgcctgtttttcccccctgcgtttcc 249

                                                           
Query: 241 acaaacagtcaaggacggggccgtcatattttattgttttattattac 288
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gcaaacagtcaaggacggggccgtcatattttattgttttattattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)