BAC Information

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BAC

Clone NameMSMg01-265G19
Chromosome9 (Build37)
Map Location 77,992,421 - 77,992,704
singlet/doubletsinglet
Overlap geneIck
Upstream gene2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9
Downstream geneC920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265G19.T7 (MSMg01no265_g19.b1)MSMg01-265G19.TJ (MSMg01no265_g19.g1)
ACCAG406692AG406693
length773775
length of high quality
(start - end)
157 (11 - 167)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no265_g19.b1 PHD_FILE: MSMg01no265_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:54 2005CHROMAT_FILE: MSMg01no265_g19.g1 PHD_FILE: MSMg01no265_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTACCTATAGGGAGAGGATCCGCGGAATTCTGCAGTGAATATCTTTGG
TTCTGGGCATAGCTCACTTATGAGACTTTTCTTTTTTCTTTTTTTTTTTT
TTTTTAGGTTTTTCGAGACAGGGTTTCTCTGGCTATCCTGGAACTCACTC
TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTACCTCCC
AAGAGCTGGGAATAAAGGCATGCGCCACCATGGCCAGACGAGACTTTTTT
ATTAAAATTTTTAAATTTATTTTATTAAAAAGTAAAAGAGTAAAATGTTT
TATTATGTACAAAAAAAAGACAAAAGAGAGAAAAATTTAATAAGTTCCCC
CCCCCCCCCCCCACAATGAAATATTAAGTAAAATAGTNACCCACCACCCC
CCCCCCAAAAATAAAATAATAATTATTTAGGAAAAATAATAAATTAAGAA
GACAAATAAAAAAACAAAATAAAAAATTAATATCTACAGTTAAACTTAAA
TAAATAAAATAAAGCCAATCATGAAAAACCATATCAAAAAATAAAACTAC
AAAATAAATACTAAATTTATAAAATTAAATAACAATTANAATAAAAAATA
TTAAATAAAAAATTCTAAATTAAAAAAATATATCTTAATACTACAATATA
TAACATTTATCCAATATCAATACAAAATAATAGATAAATTGATATTAAAC
TTGAAAATTCAAATTAAAATAATGCAAATNATTATTTATAAAATAATATA
TTCTCTTTATCCAAATAACACCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTGCCATTCCCTCTCAAGCC
TTAGGCACTGGGAATGTGTGCAATGTGAAGGAAGGTTCAGCGGTGGAGGG
TCAGGCCTGTGCTTTCAAAACCTCACCATCCTGGCCATCACCAGAGGTGG
ACGTTGTTGACATTTTTCCCAACAGCGATATGCGTGGTTCTGGTTGGAGT
CAACTCCATCTGTTACTCTTTTCATTCCTTGCCAACGTCACAGATAGGGA
GAACAGAAAGTAGCCATGCCTCTCAAAGAAGAGGAGACCAGAGCTTTGAG
AGGCTCACAGCTTCTTTTTAGAGCGCACTGCACCAATGCAGAGGAAGCTC
AAGTCCTAGCCCCTCCCCCACCACGATGATGATGATGATGATGATGATGA
TGATAAACAACCTTTTAAGAAATGGAGTATAGGGAACAGGAAAAGAGAGG
TGGTTTGTGGGTAGGAGTACTTATTACTGAACCTGTGAGACTGAGATCAT
TCTCAGTTGCTAGAATGAACAGTTCCTGCCAGTTGTCCTCTGTCCTCAAC
ACATATGTCTTCGGTAACACTTGAACACTCTCTCATTCTACTTTAAAATA
AATGTGATGATTTTGATATTTGTTTTATTTACTTTACCGGGTTGTTTGTA
TTCAAAAAACTTGCTTTATTCTTTTATAGAACATATTATCAATATGTTAT
ATTTTTTTCTTATTCTTACACCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_g19.g1 MSMg01no265_g19.g1 CHROMAT_FILE:
MSMg01no265_g19.g1 PHD_FILE: MSMg01no265_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:54 2005
         (284 letters)



>mm_chr9_77992221_77992904
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcactgccattccctctcaagccttaggcactgggaatgtgtgcaatgtgaaggaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcactgccattccctctcaagccttaggcactgggaatgtgtgcaatgtgaaggaaggt 260

                                                                       
Query: 61  tcagcggtggagggtcaggcctgtgctttcaaaacctcaccatcctggccatcaccagag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagcagtggagggtcaggcctgtgctttcaaaacctcaccatcctggccatcaccagag 320

                                                                       
Query: 121 gtggacgttgttgacatttttcccaacagcgatatgcgtggttctggttggagtcaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggacgttgttgacatttttcccaacagcgatatgcgtggttctggttggagtcaactc 380

                                                                       
Query: 181 catctgttactcttttcattccttgccaacgtcacagatagggagaacagaaagtagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctgttactcttttcattccttgccaacgtcacagatagggagaacagaaagtagcca 440

                                                       
Query: 241 tgcctctcaaagaagaggagaccagagctttgagaggctcacag 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctctcaaagaagaggagaccagagctttgagaggctcacag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)