BAC Information

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BAC

Clone NameMSMg01-265P07
Chromosome9 (Build37)
Map Location 54,977,656 - 54,977,968
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897
Downstream gene1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265P07.T7 (MSMg01no265_p07.b1)MSMg01-265P07.TJ (MSMg01no265_p07.g1)
ACCAG407072AG407073
length746765
length of high quality
(start - end)
320 (23 - 342)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no265_p07.b1 PHD_FILE: MSMg01no265_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:37 2005CHROMAT_FILE: MSMg01no265_p07.g1 PHD_FILE: MSMg01no265_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCAAACTCACAGTCAC
CTACTTTAGACATAGTTGAAAACACACACCCCAATTTTGTATAGCTGACT
CCAGATTCTATAATGACCAAGGACATAGGATCTGGGCTCAGATACGGGCT
CAGCACACACAGGCTGTAAAATACACAATAGCTTATGGTCTTAGTTGCTT
AGTGTGTAGCAGGGATTATTAACTGAGACAGGTGTGAAAAATCAGCACAC
TCCCTGGTTCAGAAAGCCTCAAGCATGATCACTACCATTCTGACAACACA
TACATTAGTGAGACAGAAAAGTACTCATAACCACAGCTGTAGGTGNNGTT
CACCCCCCCCCCCCCGCATACATCTACATGTTCTTGCCTTAGCTCACAGC
CCTGTTCTAGAAAAAAATCTTGAACTCAGTGCTCAGTTTGCATTACAGCA
CAGCTGTCACATGGCCTGATAAATGAAGTTGACATAACACCCTGCTTTTT
AAAATCATTTTGTTCGTTTACATTTCAAACGATATCCCCCTTCCTAGTTA
CCCCTTCACAAACCCCCCATCCCATTGCCCCTCTTCCCCCTCCCCTTTGC
CTCTATGAGGGTGCTCCTTCACCCATCCATCCACTCTCACCTCACCGCTC
TAGCATCCTCCTACGTTGGGGAATCAAGCCTCCCTAAGTCCAATGGCCTT
CCCTTCCCTTGATGCCAGATAAAGCAGTCCTCTGCTATATATGTTN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACGCATTTAAAGAATGATTCGTC
TTTATGCTCTTTTAAAATGTATAGTCCTCTTACACGCGTTCGCGACCGGC
CAGGAAGAACGCAACAAACCGGAATCTTCTGCGGCAAAGCTTTATTGCTT
ACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGCTCTATTGCTTACAT
CTTTAGGAGCCAGAGCGCAAGAGCACAAGGGAGCAAGAGTGCAAGCGCTT
TATTGCTTACATCTTTAGGAGCCTTAGAGCAAGAGAGCAAGAGCGAGGGC
AAGAGCGCAAGATTTAATAGCTTTACCCNTTCCACCCTTAGGAGCAAGAA
GGTAAGAGTGCAAGAGCAAGAGAGCAAGAGAAAAAAAGAGCGAATGGCGA
AACCCCGTCCCTTTTTAAGGAGAATTATTCTCCGCCTAGGACGTATTACT
CCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAG
AGCACATGGGGTGGAAAACTACCCTTGGCACATGCGCAGATTATTTGTTT
ACCACTTAGAACACAGGATGTCAGCGCCATCTAGTACCGGCGAATGTGAG
GGCGGCTCCCCACCAAAGTTAACTTTATTTTATGTTCACTGGTATTTTCC
CTGTGTGTATATCCGTAAGAGGGTGTCAAAAGCCCTGGAATTTAAATTTA
TATTACGGTGCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_p07.b1 MSMg01no265_p07.b1 CHROMAT_FILE:
MSMg01no265_p07.b1 PHD_FILE: MSMg01no265_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:37 2005
         (320 letters)



>mm_chr9_54977452_54978171
          Length = 720

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccaaactcacagtcacctactttagacatagttgaaaacacacaccccaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccaaactcacagtcacctactttagacatagttgaaaacacacaccccaatt 264

                                                                       
Query: 65  ttgtatagctgactccagattctataatgaccaaggacataggatctgggctcagatacg 124
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 ttgtatagctgactctagattctataatgaccaagggcataggatctgggctcagatacg 324

                                                                       
Query: 125 ggctcagcacacacaggctgtaaaatacacaatagcttatggtcttagttgcttagtgtg 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 ggctcagcacacacaggctgtaaaatacacaacagcttatggtcttagttgcttagtgtg 384

                                                                       
Query: 185 tagcagggattattaactgagacaggtgtgaaaaatcagcacactccctggttcagaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagcagggattattaactgagacaggtgtgaaaaatcagcacactccctggttcagaaag 444

                                                                       
Query: 245 cctcaagcatgatcactaccattctgacaacacatacattagtgagacagaaaagtactc 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccacaagcatgatcactaccattctgacaacacatacattagtgagacagaaaagtactc 504

                        
Query: 305 ataaccacagctg 317
           |||||||||||||
Sbjct: 505 ataaccacagctg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)