BAC Information

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BAC

Clone NameMSMg01-265P17
Chromosome9 (Build37)
Map Location 87,241,274 - 87,241,555
singlet/doubletsinglet
Overlap genenone
Upstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik
Downstream geneLOC671706, Tbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265P17.T7 (MSMg01no265_p17.b1)MSMg01-265P17.TJ (MSMg01no265_p17.g1)
ACCAG407092AG407093
length721722
length of high quality
(start - end)
315 (46 - 360)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no265_p17.b1 PHD_FILE: MSMg01no265_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:39 2005CHROMAT_FILE: MSMg01no265_p17.g1 PHD_FILE: MSMg01no265_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGAGCTCCATTTTTTAATGGGGTTATTTGAATT
TCTGGAGTCCACCTTCATGAGTTCTTTTTATATATTGGATATTAGTCCCC
TATATGATTTATGATAGGTAAAAATCCTTTTCCAATCTGTTGGCGGCCTT
TTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTAT
GACGTCCCATTTGTCTATTCTCTATCTTACAGCACAAGCCATTGCTGTTC
TATTTAGGAATTTCCCCCCTGTGCCCATATCTTCGAGACTTTCCCCACTT
TCTCCTCTATATTTTCACTGCCCCCCACTTTATGTGGAGTTCCTTGATCC
ACTTAGATTTACCACACAGGAAAGGATCAATTCTCATTCTTCTACATGAT
AACCGCCAATTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCAA
CTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTG
GGTTCATTTCTGGGTCTTCAATTCTAGNCCATTGGTCTACTTGTCTGTTG
CTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTT
TAGGTCAGGTATAGTGATCCCACCAGAGGTTCTTTTATCCTTGAGAAGAG
TTCTTGCTATCCTAGGGNTTN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACACTGATGACTTTTCAAGCT
ACTCTGGCACCCTCCTAAAAACTCATAATGGTTAGCTAGTGGTGTGATGA
GCATTGCCTGGATACTGTGATAGGAGCTTGTGATGGAGATCTGATCTGAT
TAAGAATGGAAATATGTACTCATTTGCAAGTGAAATCTAAGACTAATGAC
CAAACAAAATTCTTGGCAAGTCTTTGGAGCTGCCACAAACTTTACAGTCT
ATGAGGTTAGGTTGAGGGTTGTGCACCATTTGTGGGCCAGTCAAGCTGAT
CTCTGGATGTTTTCTGGTACATCCCCCCTGCTCAGTGGTAGGAGCAGCTT
GGCGGTGGAAAGCGCGACGGCTGTCAGGAGGGTTCCCTCATCTCTTGGTC
TGAAGCAGCGGTTTGCATGATTAGCCACTAGGGCACACACTTAAGAAGTC
TAGAGGTCAACAAGATAGGCTTGTTACACTTTTTATGCCCACACACTCGG
AGGATTGTGTTGTTGAGTTGCCAGAGAAAGGCAGCCCCTCAGAAGCAATT
TATAAACCCAAACATCTGAACTTCATCCTACCCATGGATCACCCCTGAAA
TGCAACTGTGATCCAGGATTTTTTTTTTTTATCTGCCCTTTGACTTCCTA
TTCCTATTCCTTCTTTCTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_p17.g1 MSMg01no265_p17.g1 CHROMAT_FILE:
MSMg01no265_p17.g1 PHD_FILE: MSMg01no265_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:39 2005
         (281 letters)



>mm_chr9_87241074_87241755
          Length = 682

 Score =  520 bits (269), Expect = e-152
 Identities = 279/283 (98%), Gaps = 3/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacactgatgacttttcaagctactctggcaccctcctaaaa--actcataatggtta 58
           ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||
Sbjct: 201 cacacactgatgacttttcaagctactctggcaccctcctaaaatga-tcataatggtta 259

                                                                       
Query: 59  gctagtggtgtgatgagcattgcctggatactgtgataggagcttgtgatggagatctga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 gctagtggtgtgatgagcattgcctggatactgtgataggagcttgtgatggagacctga 319

                                                                       
Query: 119 tctgattaagaatggaaatatgtactcatttgcaagtgaaatctaagactaatgaccaaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgattaagaatggaaatatgtactcatttgcaagtgaaatctaagactaatgaccaaa 379

                                                                       
Query: 179 caaaattcttggcaagtctttggagctgccacaaactttacagtctatgaggttaggttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaaattcttggcaagtctttggagctgccacaaactttacagtctatgaggttaggttg 439

                                                      
Query: 239 agggttgtgcaccatttgtgggccagtcaagctgatctctgga 281
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agggttgtgcaccatttgtgggccagtcaagctgatctctgga 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space:   183056
Effective search space used:   183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)