BAC Information

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BAC

Clone NameMSMg01-266D14
Chromosome9 (Build37)
Map Location 23,723,716 - 23,724,014
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266D14.T7 (MSMg01no266_d14.b1)MSMg01-266D14.TJ (MSMg01no266_d14.g1)
ACCAG407271AG407272
length752759
length of high quality
(start - end)
659 (73 - 731)301 (77 - 377)
definitionCHROMAT_FILE: MSMg01no266_d14.b1 PHD_FILE: MSMg01no266_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:57 2005CHROMAT_FILE: MSMg01no266_d14.g1 PHD_FILE: MSMg01no266_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGG
AATTCTCAACTGATGACACTTGAATGGATGAGGAGCACTTAAAGAATTGT
TCAACATCCTTAGTCATCAGGAAAACGCAAATCAAAATGACCCTGAGATT
CCACTTCACACCAATCAGAATGGCTAGGATCAAAAACTCAGGTAACAGCA
GAAGCTGGTGAGGGTATGGAGAAAGAGGAATACTCCTCCATTACTGCTGG
GACTGCAAGTTGGTAAAAGCACTTTGCAAATCAATATGGTGGTTCCTGAG
AAAATTGGAAATGTTTCTCCCTGAACTCCCAGCTATATTACTATGGAGCA
TATACCTAAAAGAAGCTCCTACGTATAACAAACACACTTTCTCCACTATG
TTTATAGAGCTTTCTTACCACAGCCAGAAGCTTGAAACACCCTAGATGTC
CCTTAAGAGAAGAATGGATACAGAAATTGTGGTACATTTACACAATGGAG
TACTAGTCAGCTATTAAAAGCAATGGCTTCATGAAATTTGCAGGCAAATT
GATGGAACTAGAAAATACCATTCTAAGTGAGGTAAACCAGACATAAAAGA
ACACACATGGTATATACCCACTGATAAGTGGATTTTAGCCCCCACATTCA
GAATACCCATGATACAACCCCAAAACCATATGTAGCTTAAGTAGAAGACC
AACATGTAGATGCTTCAATCCTACATAGAATGGTGAACAAAATAATCACA
GG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAACTGTTCTCCAATTCTGCA
TTGCCAATAACCTAAGAACATGCTTAACATAACAAAATGATTGAAAACTC
AAAGGGATAATTTATGATGTAAAAATTACACAAGATTTACATATTATTGT
TCATAGATAGTCCTAAGGGACTGTAGCCATGTCTGTTAATTAGGATTGTC
TGCAGCTTCTTTGGGGTTACCGTGGCAATGAGGCAAACCAAGAGCTGTAC
CAGCTGGTGCTTTGCAGCCAAGCTACTGACCCTCTCTGCAATCCATTATT
TTTATTTTATAATTTATCTTTTGTGCACCACCCCTCCATTTCTCTTATTT
GCTAGAGAGCTACATAGTGAACCCTAATGCCGTCCAAGTTTCTTCATTTT
ATGGGCATAACATTTTGATTAAAATCTAGAGACAGAATATAAATTCCTTT
GATTATAGAGATAGAGGGATGTCATTTATTGGATAGCCATTATGTGCTGT
GAATCTCTTATTCAATCCTCAGAATGACTCTCTGTGCTGTTTGCGTTAGA
GATGTTTTTAAGGATGAGGAGAGTATGCAGAAGAGGTTGTGGTTTTCCTT
ATGTTTACAGTGATTATCAGCAGAGCTGGCATTGGAACCATCCTTACTCC
AGCATCTGCACTTGTCCACTTCCCTACAATTTGTCCATCTTCGATTAGCT
AAACCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_d14.g1 MSMg01no266_d14.g1 CHROMAT_FILE:
MSMg01no266_d14.g1 PHD_FILE: MSMg01no266_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:57 2005
         (301 letters)



>mm_chr9_23723547_23724247
          Length = 701

 Score =  578 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaactgttctccaattctgcattgccaataacctaagaacatgcttaacataacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctaaactgttctccaattctgcattgccaataacctaagaacatgcttaacataacaaa 409

                                                                       
Query: 61  atgattgaaaactcaaagggataatttatgatgtaaaaattacacaagatttacatatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atgattgaaaactcaaagggataatttatgatgtaaaaattacacaagatttacatatta 349

                                                                       
Query: 121 ttgttcatagatagtcctaagggactgtagccatgtctgttaattaggattgtctgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttgttcatagatagtcctaagggactgtagccatgtctgttaattaggattgtctgcagc 289

                                                                       
Query: 181 ttctttggggttaccgtggcaatgaggcaaaccaagagctgtaccagctggtgctttgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttctttggggttaccgtggcaatgaggcaaaccaagagctgtaccagctggtgctttgca 229

                                                                      
Query: 241 gccaagctactgaccctctctgcaatccattatttttattttataatttatcttttgtg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gccaagctactgaccctctctgcaatccattatttttattttataatttatcttttgtg 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)