BAC Information

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BAC

Clone NameMSMg01-266E24
Chromosome9 (Build37)
Map Location 16,465,737 - 16,615,849
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC330891, Slc36a4, Mtnr1b, Fat3
Downstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266E24.T7 (MSMg01no266_e24.b1)MSMg01-266E24.TJ (MSMg01no266_e24.g1)
ACCAG407336AG407337
length754758
length of high quality
(start - end)		321 (45 - 365)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no266_e24.b1 PHD_FILE: MSMg01no266_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:04 2005CHROMAT_FILE: MSMg01no266_e24.g1 PHD_FILE: MSMg01no266_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,465,737 - 16,466,053)(16,615,557 - 16,615,849)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAAGCCCGTGTCTGATGGCTCACAAATGAATGCAGTCTTCCTGCA
AAACCTGCTCTTGTGACTTATATCTCGCTGTCGTTTAGGTCTGGCTCTGT
CTTGCTTTTTTGGTTTCAGGACTTTCATTACCTTTACCTTAGAACACTTC
TGTATCCTAGGAGATTTCTCTAATGTGTTTATTATTCCTGATTCTGCTTT
TTTGCAAAGGACTTTTCTTCTGCTTTTCTGTGACAACCTGGCTCATGCTT
CAGATTGCACTTTACAAGTGGTTTTCTCCAAGAGGCCTTTCCTGCTGTCC
CCAGTGTCCCACTTTGTTTTTTTTGCCCTCCTCCCTCTCAAAAGGTTAAT
GCTGTAGTATATTTCTTTGCTAAGAATCAGAATTACAAGTCCGACTGAGG
GACTGAAACTGCATTTGCTGTAAAGTACTGTTGAGTCAGCATTCTTCAGC
AGTGTGCCAGACACATTGAATAAATATACAATAATGTAAGCAGGATCAGT
AAGTGCCACATTCAAAGCATACTGTTGGTTTTTTTCATACTTTTTCCCAG
TGACATGAATGTAAATTTCTTACTGTGTACAGTTTGCAATTTTGTACCAC
CTTTCATATAAAATGTTTTATAGCTTTAGAGAATATTGGATAATATGTTC
ATTTTAGGGTATAAATATATATTTTATCATCCAAAGAAAGGAGAGATAGC
TGAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTGTGTCCTATTGAGTGCCTTTGGT
GGACTATTATGTAGGAAGTTTGGAGAAGACCTCAGGAGTAAGTACAGCCA
TGTAAAACACCTAGCTAAGGTTCTGCCATACTTCGTAACACTCTCCTTTA
CTTGTATTTCAAAGAATGTACATAGTAAGTTGTTTATACCAAAAAGTGTG
CAAGAAAGGGACCTGAGTTCCATCAAGCCCCATGTCACACTCCAGAGAAG
GCTGTGGTCGGTGTCTTCTTTACTCGCTAGAGTAGTTCTGAGGAGAAATC
AGACTCCACAGGAGTCTTTTTATTTACCACGCACGCATCTACCAGCCTCC
AGGCCCCACCATCATGCTAGGCGCTGTTTCTGAGCTCAGCATCTCCTGAT
TCACAGCATCACAGCTAAAGGAGAGCAAATGGGTGTGAGAACACGTGTAA
TCAGAGCTATAATTGTATATGGGAAGTTGCAGGCATCCCAGAGGTGGAAA
AAACCAGTATGAGGGCTCTAGTAGGGAGGGTTTGCTCCAGAAGAGAGAAA
GAAAACACCGTTCACCAAGAATAGCTCCTGTAAACTCAGGATGTGAGAAA
GAATGCCTGCAAGTTAGACAAAATCAAAGTGTTCGGTTCATTTAAATTGT
ACGTAAGAAGAAACATGGGTTAATCAAAGTGAGACTAGGAAGGAATCATT
ATCTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_e24.b1 MSMg01no266_e24.b1 CHROMAT_FILE:
MSMg01no266_e24.b1 PHD_FILE: MSMg01no266_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:04 2005
         (321 letters)



>mm_chr9_16465533_16466253
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaagcccgtgtctgatggctcacaaatgaatgcagtcttcctgcaaaacctgc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaagcccgtgtttgatggctcacaaatgaatgcagtcttcctgcaaaacctgc 264

                                                                       
Query: 65  tcttgtgacttatatctcgctgtcgtttaggtctggctctgtcttgcttttttggtttca 124
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttgtgacttagatcttgctgtcgtttaggtctggctctgtcttgcttttttggtttca 324

                                                                       
Query: 125 ggactttcattacctttaccttagaacacttctgtatcctaggagatttctctaatgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggactttcattacctttaccttagaacacttctgtatcctaggagatttctctaatgtgt 384

                                                                       
Query: 185 ttattattcctgattctgcttttttgcaaaggacttttcttctgcttttctgtgacaacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattattcctgattctgcttttttgcaaaggacttttcttctgcttttctgtgacaacc 444

                                                                       
Query: 245 tggctcatgcttcagattgcactttacaagtggttttctccaagaggcctttcctgctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggctcatgcttcagattgcactttacaagtggttttctccaagaggcctttcctgctgt 504

                            
Query: 305 ccccagtgtcccacttt 321
           |||||||||||||||||
Sbjct: 505 ccccagtgtcccacttt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_e24.g1 MSMg01no266_e24.g1 CHROMAT_FILE:
MSMg01no266_e24.g1 PHD_FILE: MSMg01no266_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:04 2005
         (294 letters)



>mm_chr9_16615357_16616050
          Length = 694

 Score =  505 bits (261), Expect = e-147
 Identities = 285/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgtgtcctattgagtgcctttggtggactattatgtaggaagtttggagaagacctc 60
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 ttgtgtgttctattgagtgcctttggtgtactattatgtaggaagtttggagaagacctc 434

                                                                       
Query: 61  aggagtaagtacagccatgtaaaacacctagctaaggttctgccatacttcgtaacactc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cggagtaagtacagccatgtaaaacacctagctaaggttctgccatacttcgtaacactc 374

                                                                       
Query: 121 tcctttacttgtatttcaaagaatgtacatagtaagttgtttataccaaaaagtgtgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcctttacttgtatttcaaagaatgtacatagtaagttgtttataccaaaaagtgtgcaa 314

                                                                       
Query: 181 gaaagggacctgagttccatcaagccccatgtcacactccagagaaggctgtggtcggtg 240
           |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaaaggaacctgcgtttcatcaagccccatgtcacactccagagaaggctgtggtcggtg 254

                                                                
Query: 241 tcttctttactcgctagagtagttctgaggagaaatcagactccacaggagtc 293
           |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 253 tcttatttactcgctagagtagttctgaggaaaaatcagactccacaggagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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