BAC Information

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BAC

Clone NameMSMg01-266F11
Chromosome9 (Build37)
Map Location 52,779,384 - 52,779,668
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266F11.T7 (MSMg01no266_f11.b1)MSMg01-266F11.TJ (MSMg01no266_f11.g1)
ACCAG407356AG407357
length767733
length of high quality
(start - end)
262 (46 - 307)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no266_f11.b1 PHD_FILE: MSMg01no266_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:06 2005CHROMAT_FILE: MSMg01no266_f11.g1 PHD_FILE: MSMg01no266_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTGAATCTTATCAAAGATTTTTTTCTTTTTTCTTTTCTTCCA
TTGAGATGATCATGGTTCTTATATTTTTTGTCCATGTATTTGATTCATTG
CATTTATTTCTTATATGTTAAAAAATAAAAATAAAATCAATGAAAATAAA
AAGACAAATTGAAAAAAGAATCATAATTAAAGAAGTTGTGAATTTGAGAG
AGAGTAAGGAGTCTATAGGAAAGTGTTGGAGGGAGGAGAAGCAGGGGGAA
AATGATGCACACACACTACTTATTTTTTTTATCCCCACGACTCTCTCTCC
CACCTTATTTTTTTTTTTTTTCCCCCCCCCCCCCCCTTTATTATCCCTTT
TTATTCTTCCCTTTACCCCCCCCCCCAAAAAAATAAAATACTTTGTTTGT
CCTTTTTTTTTTCCTCTTTCATTCTTACCTTTTTTTTTTCTCTTTCCTTC
CCCATTCCCCCCTTTTTTTTTCTCTCCCCCTTTGTCATCCCTCCTTTCTT
CTTTCCTCCTCTCATCTTCTTTATCTAATCCCTTCCCCTATCTCTCTCCC
TTCTTTCTTTTTATTCATTCTTCTTCTTTTCTCCCTCCCCCTATTTTTCT
CTTACTCTATCCCCTCCCTTATTTTCCCTTCTCTTTTCCAATTTTTTTCA
CCTCTTTTTATCCCCCCTCTTCTCTACTTTATTATCCCCCTTTTTTTCCC
TCCCCCCCCTTTCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCAGGTGCTACATGTGCAAATT
GGGTTTGGAATTAAGGTTTCTTGATTTGGAAGCCTATGAATTTAAGTGCG
CAGTAGTGTTTTTCAAACCATGCTTTATATAGCACTGGGATTCTATAAAC
ATGCCTCCGAAACAGCTGCAATGGCAGAAACAGGGAGAGAGAGTGACGGG
GGGAGACAGACTCTCTCCTAGTACCCATACCTTTGAATCTTTTACAATTG
AGACTTATACACATTTTTTTCCCTTGCAGAAATGGTTGAAATGTGTCTGA
AACCATGGCTTTGCTCAACTCTCGCCATTCAAGACCCGTTTTCTCTGTCA
AGAACTCTTCCTTTTCCATTTATTCAGAAAAACAAGATCATTTCCACAAA
CACCAAGGGAACAGTTAACTGACATCCATAGTTAGCACTTTCGGCTCACA
TCATTGGTAGTTCTTGTGTAAGAAATCAAAGCATGTACCGAGTTTACTTA
GCTGTCTCCTGAAGTATATGAAACAGAGTGGGCGGTATAATAGAATACTC
CATCTAAGCCTGTCTGTTTCTTATCTCAGATATTAGATTCTGGGAATGGC
GATTTATTGAGCGGAAAGCTGCATAGGGCGCTAGGTTGTGGGGTATTAAG
GACACTGATAGATCTGATAGACGTGCACAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_f11.g1 MSMg01no266_f11.g1 CHROMAT_FILE:
MSMg01no266_f11.g1 PHD_FILE: MSMg01no266_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:06 2005
         (285 letters)



>mm_chr9_52779184_52779868
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcaggtgctacatgtgcaaattgggtttggaattaaggtttcttgatttggaagccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgcaggtgctacatgtgcaaattgggtttggaattaaggtttcttgatttggaagccta 426

                                                                       
Query: 61  tgaatttaagtgcgcagtagtgtttttcaaaccatgctttatatagcactgggattctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaatttaagtgcgcagtagtgtttttcaaaccatgctttatatagcactgggattctat 366

                                                                       
Query: 121 aaacatgcctccgaaacagctgcaatggcagaaacagggagagagagtgacggggggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaacatgcctccgaaacagctgcaatggcagaaacagggagagagagtgacggggggaga 306

                                                                       
Query: 181 cagactctctcctagtacccatacctttgaatcttttacaattgagacttatacacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagactctctcctagtacccatacctttgaatcttttacaattgagacttatacacattt 246

                                                        
Query: 241 ttttcccttgcagaaatggttgaaatgtgtctgaaaccatggctt 285
           |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 245 ttttcccttgcagaaatggttgaaatgtatctgaaaccatggctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)