BAC Information

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BAC

Clone NameMSMg01-268A22
Chromosome9 (Build37)
Map Location 29,256,514 - 29,256,619
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268A22.T7 (MSMg01no268_a22.b1)MSMg01-268A22.TJ (MSMg01no268_a22.g1)
ACCAG408604AG408605
length714757
length of high quality
(start - end)
317 (46 - 362)106 (77 - 182)
definitionCHROMAT_FILE: MSMg01no268_a22.b1 PHD_FILE: MSMg01no268_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:16 2005CHROMAT_FILE: MSMg01no268_a22.g1 PHD_FILE: MSMg01no268_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGCTTAGCACAATGTTGTCATCATTCATGAATATTGTAACATA
GCTTGGTGACCTGTGTCCATTTTCAGCTGAATGGTCCACTCTGTGAATGC
ACTGTATTTTTTTTTTTTAATCCATGCATGGAGTAGTAGAACCTTTGGGA
ATGTCTACTCTGGAGCTGTCATTAAAGACGCTGTTCAAAATGTTTGCACA
CAGGACCTACTTGATGAAAACTTTCAATTTTCTTTACTTAGGAAATATAC
TTAGGACAGAGTTCCTGGGTTGTGTGGCAATCCTGTTGAACATTTTGAGG
AACTGTCAACTGCCTTTTATAGTAGCCTCAGCGTCTTTTCTTCCCACCTA
CAGGGGAGTCTCTACTTCCCTTCAAACCTTTACTAGTATCTGTGTCTTCT
TGTGATTTTACTTCACTTTACAAAAGATTAATGATGTTAAGCACATTTCT
ATGTGAGTACTACCCATTTGTGTAAATTTCCAAATCTTTAGATTTTAACA
TGCTCTACTTGAGGTTGGAATGACAGATCTTCATAAAAAATATCAGGGTG
AGCACATATCCCCCTCTAAAGACACAGAAATTAAGGCTTTGATTAGAATA
ACACCGGGATTTTACAGGGAATTTTTAAACCTCCCCTGGTGGGGGGGCTT
GGAAGTGGTGGGGG
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTTATAATCTGTTTGGTATC
ATGCATATTGATAACCATCTAATGGCAAGTGACTTACTGTTTTTCTGCTG
ATGTTATTTTTAAAAATTGGAAACATAACACAATGGGAAAATTCATGTTG
AGGGAAGACCCTTAAAATTANATAAAAACTGACCTAGTACACGGCCTCTG
CCATGCCTTGCCGCTGCATCAAGATGAGCTCTATCCACCTCGGAGCAAGA
GTGNATTCTATCAGCAGCAGCTGTCACNAGAGTCAGACTTTTGTTTTCCC
CAACTCGCCCCAACANNNNNNNNNNNNNNANAAAAAAATATAATAAAAAA
TAAAAAAAAATTTTTTNTTTTTTTTTTTGGTGNNNNTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTNTTNNNTNTTTTATTTNTTTATTNNAAATTTT
TTATATATTTCTTTTAATATTAAAAATATTTTAAAATTTATATTATTATT
TAAATTTTTTATAATATTATTTTTAAAATATNATTATTTTTTATATTTAA
AAAATTAAATTTAATTAATTTTTAAAATAATTATATATTTTTTTTTTTNT
NTTTTTTTTTNTATTCTTCCTTTCAAATATCTCCTCAAATAACACTATGG
GGNNNNNTCTCATAAATCTGNNNNNAATAACCGNNNNNNNNNNTNNTNNN
GTGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_a22.g1 MSMg01no268_a22.g1 CHROMAT_FILE:
MSMg01no268_a22.g1 PHD_FILE: MSMg01no268_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:16 2005
         (106 letters)



>mm_chr9_29256314_29256819
          Length = 506

 Score =  197 bits (102), Expect = 1e-55
 Identities = 105/106 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtttataatctgtttggtatcatgcatattgataaccatctaatggcaagtgactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtttataatctgtttggtatcatgcatattgataaccatctaatggcaagtgactta 260

                                                         
Query: 61  ctgtttttctgctgatgttatttttaaaaattggaaacataacaca 106
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttttcctgctgatgttatttttaaaaattggaaacataacaca 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)