Query= MSMg01no268_b18.b1 MSMg01no268_b18.b1 CHROMAT_FILE:
MSMg01no268_b18.b1 PHD_FILE: MSMg01no268_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:20 2005
(296 letters)
>mm_chr9_52452608_52453303
Length = 696
Score = 538 bits (278), Expect = e-157
Identities = 292/298 (97%), Gaps = 4/298 (1%)
Strand = Plus / Plus
Query: 1 gttgctcctttgccattatgacaaaatactttactaaagtcatggtgctgtagccagact 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gttgctcctttgccattatgacaaaatactttactaaagtcatggtgttgtagccagact 260
Query: 61 tggtgggaaag--gcatggtggcgagatgggctgtggccagagcaagaaaagtatacctt 118
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tggtgggaaagatg--tggtggcgagatgggctgtggccaaagcaagaaaagtatacctt 318
Query: 119 catgagtcataccgcttctctggcaagaggcagagaaagagaaatgaccaggctccaccc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catgagtcataccgcttctctggcaagaggcagagaaagagaaatgaccaggctccaccc 378
Query: 179 cctgtttcctgttttccccatttctatttatttcagcactggagcacatgagaaggtact 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctgtttcctgttttccccatttctatttatttcagcactggagcacatgagaaggtact 438
Query: 239 gccgccattcagactggatctctactcttcagccaaatttctctggaaacactctcac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gccgccattcagactggatctctactcttcagccaaatttctctggaaacactctcac 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no268_b18.g1 MSMg01no268_b18.g1 CHROMAT_FILE:
MSMg01no268_b18.g1 PHD_FILE: MSMg01no268_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:20 2005
(283 letters)
>mm_chr9_52608573_52609255
Length = 683
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Minus
Query: 1 ctcttctgtggccagtaaacaggcctctctagcataaatatgggtgataagtgagagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctcttctgtggccagtaaacaggcctctctagcataaatatgggtgataagtgagagagc 423
Query: 61 cactctcccagctctgatcccatgagaggaactactctgaagaagggttttggatcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cactctcccagctctgatcccatgagaggaactactctgaagaagggttttggatcaagt 363
Query: 121 aggccctagggatcatgactggtttacactagcatttcctaagcctagatatccaccctc 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 362 aggccctagggatcatgactggtttacactagcatttcctcagcctagatatccaccctc 303
Query: 181 ccccatacccctccccacacaatatttgacagatagcagtactattgggcaccaacagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccccatacccctccccacacaatatttgacagatagcagtactattgggcaccaacagac 243
Query: 241 cttgcaaacttgtcttgccaactgctcctgccaaagctagaa 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cttgcaaacttgtcttgccaactgctcctgccaaagctagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
