BAC Information

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BAC

Clone NameMSMg01-268G10
Chromosome9 (Build37)
Map Location 87,529,931 - 87,700,291
singlet/doubletdoublet
Overlap geneTbx18, LOC671731
Upstream geneMod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268G10.T7 (MSMg01no268_g10.b1)MSMg01-268G10.TJ (MSMg01no268_g10.g1)
ACCAG408844AG408845
length718718
length of high quality
(start - end)
315 (46 - 360)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no268_g10.b1 PHD_FILE: MSMg01no268_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:40 2005CHROMAT_FILE: MSMg01no268_g10.g1 PHD_FILE: MSMg01no268_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,699,983 - 87,700,291)(87,529,931 - 87,530,211)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGATATAATGGCTGAAGTTGTCCTATTTATGCCCATTCATAGG
CGTGAAGACTGAAAATTAAAGAGGTTAGGTAGTATAGATGCTCTGGTGTC
TGGGAACTCACACCATCTGTAAGAAGGAAGCTGGGTAGCAAAATGAGATG
ATGTGGTAACTTGGAAAAGTTTAACACATAAACATTCAGGTATGATACTA
CAGCTGGGTATCAACAAAACATAAGCCCCAGGCCAAGGTCACCTTGCCTT
CTAGCTTGGTAAAGTCAGGCAGAAGCACATTTGTGTTTGTTTGATCATAG
TCTGTATGNGTCNGTTTTCACACCACCCCCGAAGAGAGTCGATGCAGCAG
TGACTGAATTTCCCACAAAACTCAAAGTACTTACTACGAAGCCTTTTACA
GAAAACATGCAGTGACTCCCTTACGAGACAGAAGAGAAGATCTGACCTAG
AGCTTCCCCTGACTTCCCAGGAGGAACACCAGGATTGCTCTATTTTAATC
CATTTACAGTATATACCTGTCTGGTGGTCATGAGCAAATTCCAGATGAAG
GCAGTTGATAAGAAGTACTTAAACCAAATTATGTAAGTGATATTCACTGT
ATCATTGGGAGATGCAGAATACCGGTGATGTAGAAGTTAATAACCAGACT
TCCTAACAATATTTTAAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACTTTCTGTGCAACCAAAGGGC
AATCTTTATTACCTGAATTAAATTAAAACTGATTTCCTCTTCTTCCATGC
CATGGGATCAGAGAGCTCTACAACAAAGGAATATATTTTATTTTCACTTT
CTCTCTACAAGGCCGTCTCCATCACTGCCAATGTCCTGTGTTAGTCTGTT
CAAGGTGCTTAGATTGATTCTTAAACACAAAAGAAATCTATGTCTGATGG
TTCTTAAGCCTGATAAATCCATTAGCAAGGCGCCAGTGGATGCTTTGGAT
GTTCAGTTAGATCAATTCTCCATTCCATCCCTTTTAGTATCCACAAATGA
TGTGAGGTGCAAAGAGTCTCACAATACATTCATGAAAATCACCATATTCT
TGAGAAAAGACCCTCATGACATAATCCCTTCACAGATGCCTCTCAATGTC
ATTACCTTGAAGGTTTATTTCAACATACAAATTTGGAGAGGACATTTTCA
GACTATATCTTGGTTCACATAAGAAAGGGAGCCCCTCCCTGGTGCCTGTT
CTGTGACTAAATTCAACTGGAAATTGAATTTTTCTACTTTAAATTAGGTC
TACCACTACTTACCACACACCCTCCAAGCTCAAGAAATAATAAATTAGCA
AAGACAAAGCTACAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_g10.b1 MSMg01no268_g10.b1 CHROMAT_FILE:
MSMg01no268_g10.b1 PHD_FILE: MSMg01no268_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:40 2005
         (315 letters)



>mm_chr9_87699779_87700493
          Length = 715

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgatataatggctgaagttgtcctatttatgcccattcataggcgtgaagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctgtgatataatggctgaagttgtcctatttatgcccattcataggcgtgaagac 454

                                                                       
Query: 65  tgaaaattaaagaggttaggtagtatagatgctctggtgtctgggaactcacaccatctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgaaaattaaagaggttaggtagtatagatgctctggtgtctgggaactcacaccatctg 394

                                                                       
Query: 125 taagaaggaagctgggtagcaaaatgagatgatgtggtaacttggaaaagtttaacacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 taagaaggaagctgggtagcaaaatgagatgatgtggtaacttggaaaagtttaacacat 334

                                                                       
Query: 185 aaacattcaggtatgatactacagctgggtatcaacaaaacataagccccaggccaaggt 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaacattcaggtataatactacagctgggtatcaacaaaacataagccccaggccaaggt 274

                                                                       
Query: 245 caccttgccttctagcttggtaaagtcaggcagaagcacatttgtgtttgtttgatcata 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 273 caccttgccttctagcttggtaaaatcaggcagaagcacatttgtgtttgtttgatcata 214

                    
Query: 305 gtctgtatg 313
           |||||||||
Sbjct: 213 gtctgtatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no268_g10.g1 MSMg01no268_g10.g1 CHROMAT_FILE:
MSMg01no268_g10.g1 PHD_FILE: MSMg01no268_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:40 2005
         (281 letters)



>mm_chr9_87529731_87530411
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactttctgtgcaaccaaagggcaatctttattacctgaattaaattaaaactgatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ccactttctgtgcaaccaaagggcaatctttattacctgaattaaattaaagctgatttc 260

                                                                       
Query: 61  ctcttcttccatgccatgggatcagagagctctacaacaaaggaatatattttattttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttcttccatgccatgggatcagagagctctacaacaaaggaatatattttattttca 320

                                                                       
Query: 121 ctttctctctacaaggccgtctccatcactgccaatgtcctgtgttagtctgttcaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttctctctacaaggccgtctccatcactgccaatgtcctgtgttagtctgttcaaggt 380

                                                                       
Query: 181 gcttagattgattcttaaacacaaaagaaatctatgtctgatggttcttaagcctgataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttagattgattcttaaacacaaaagaaatctatgtctgatggttcttaagcctgataa 440

                                                    
Query: 241 atccattagcaaggcgccagtggatgctttggatgttcagt 281
           |||||  |||||||| |||||||||||||||||||||||||
Sbjct: 441 atccaggagcaaggcaccagtggatgctttggatgttcagt 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)