Query= MSMg01no269_e11.b1 MSMg01no269_e11.b1 CHROMAT_FILE:
MSMg01no269_e11.b1 PHD_FILE: MSMg01no269_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:42 2005
(456 letters)
>mm_chr9_119882054_119882909
Length = 856
Score = 787 bits (407), Expect = 0.0
Identities = 440/459 (95%), Gaps = 14/459 (3%)
Strand = Plus / Plus
Query: 5 gaattccactcgaccattggggttctcgcagccctccctgcagcagccacaggggaagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactcgaccattggggttctcgcagccctccctgcagcagccacaggggaagga 264
Query: 65 cgtgtgatccatctgcagagaaagacaaagctaaagtgagaacttcagagatgcaagaag 124
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 265 cgtgtgatccatctgcagagaaagacaaagccaaagtgagaacttcggagatgcaagaag 324
Query: 125 ccagcaggcccggctccccacagacagggtttccctgtgtagccctgcccgagtactggg 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 ccagcaggcccggctccccacagacagggcttccctgtgtagccctgcccgagtactggg 384
Query: 185 attataggcacaccccccttatcttacccagtccgaccacgcacctggcacttaatgccg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attataggcacaccccccttatcttacccagtccgaccacgcacctggcacttaatgccg 444
Query: 245 gccaagctgcaactgcaggtctcagggtcacagacgccatcacagtgacaaccacaatcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccaagctgcaactgcaggtctcagggtcacagacgccatcacagtgacaaccacaatcc 504
Query: 305 tcccgggattggttgttttc-------ctgcagctcccgcttctcctctcggtcaatcct 357
|||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct: 505 tcccgggactgg-------cgcagcacctgcagctcccgcttctcctctcggtcaatcct 557
Query: 358 tcgaacgccggaagcccgaaggagggcccgtcgctgccgaggtggatggggctggaggaa 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 tcgaacgccggaagcccgaaggagagcccgtcgctgccgaggtggatggggctggaggaa 617
Query: 418 attggcttcctccaggcggccatttgccacggccactgc 456
|||||||||||||||||||||||||||||||||||||||
Sbjct: 618 attggcttcctccaggcggccatttgccacggccactgc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_e11.g1 MSMg01no269_e11.g1 CHROMAT_FILE:
MSMg01no269_e11.g1 PHD_FILE: MSMg01no269_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:42 2005
(550 letters)
>mm_chr9_120007081_120008030
Length = 950
Score = 919 bits (475), Expect = 0.0
Identities = 512/529 (96%), Gaps = 8/529 (1%)
Strand = Plus / Minus
Query: 22 agctggtggtaccgctagacagtgaacagcaggtggcgatagagcacaacttcctggttc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 agctggtggtaccgctagacagtgaacagcaggtggcgatagagcacaacttcctggttc 891
Query: 82 taaccaattcctcaccgggttctagcttcattcccagtcccctttaatgggtaaggaatt 141
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 taaccaattcctcacccggttctagcttcattcccagtcccctttaatgggtaaggaatt 831
Query: 142 ggaagcagcaaacagttatatcagttaccccaagtgtgataaccaaaagaaaacaaacaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ggaagcagcaaacagttatatcagttaccccaagtgtgataaccaaaagaaaacaaacaa 771
Query: 202 acacacaaacaaacaaacaaacaaacaagtcctaacctgtccgctgtttatttcatcacg 261
|| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 acgc--------acaaacaaacaaacaagtcctaacctgtccgctgtttatttcatcacg 719
Query: 262 ttactaagatttttcgtttaaatgtatgaagggagttgacggcctctgtaaggatatcag 321
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 718 ttactaagatttttcgtttaaatgtatgaagggagttgacgggttctgtaaggatatcag 659
Query: 322 gcagctgtgtgggcaggcaggacagatggtccctgtgtttccgctcattccaccccctct 381
|||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 658 gcagctgtgtgggcaggcaggacagatggtccctctgtctccgctcactccaccccctct 599
Query: 382 tacccacggcctcctggagttcagagagcttacctgaggccagctgtaagggatgcagct 441
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tacccacggcctcttggagttcagagagcttacctgaggccagctgtaagggatgcagct 539
Query: 442 ggaccaagtcaggtccttgccccatcagaaagcttagtgtgactcaagatgcccaagtga 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 538 ggaccaagtcaggtccttgccccatcagaaagcttagtgtgactcaagatgcccgagtga 479
Query: 502 ctcttgctaaataagaaccatctgagcaggactcctggaagctgacagt 550
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctcttgctaaataagaaccatctgagcaggactcctggaagctgacagt 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
