Query= MSMg01no269_o08.b1 MSMg01no269_o08.b1 CHROMAT_FILE:
MSMg01no269_o08.b1 PHD_FILE: MSMg01no269_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:26 2005
(658 letters)
>mm_chr9_53017247_53018303
Length = 1057
Score = 907 bits (469), Expect = 0.0
Identities = 574/657 (87%), Gaps = 76/657 (11%)
Strand = Plus / Plus
Query: 5 gaattccaagaatattaagattcaaattttatttctgaagataatttacaagaatgctat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagaatattaagattcaaattttatttctgaagataatttacaagaatgctat 264
Query: 65 accatctagaaatttagcctaacacagagaatattaatcttctagtcagtaaatgcaatt 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 accatctagaaatttagcctaacacagagaatatgaatcttctagtcagtaaatgcaatt 324
Query: 125 gaacttacaacaattttcattggaaaaggaagttaagttttattaagtatactagatacc 184
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 325 gaacttacaacaattt-cattgaaaaaggaagttaagttttattaagtatactagattcc 383
Query: 185 aggctgcttcaaatataaaaatcatcttagattttcctctgtgcctccaataagattata 244
||||||||||||||||||||
Sbjct: 384 aggctgcttcaaatataaaa---------------------------------------- 403
Query: 245 cccaggtaaatattaagaaatactttttaaaattaagaagtaatctatgtaaaacttata 304
||||||||||||||||||||||||||||
Sbjct: 404 --------------------------------ttaagaagtaatctatgtaaaacttata 431
Query: 305 ttgtttaaaccatttagttatggccatgcaatatagtagtagtagaaattgataaaatat 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 432 ttgtttaaaccatttagttatggccatgcaatatagtagtagcagaaattgatgaaatat 491
Query: 365 aacttccttatataattccattccaaaaacaaatactgaatttaaaagtgacttaccctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aacttccttatataattccattccaaaaacaaatactgaatttaaaagtgacttaccctt 551
Query: 425 tgagctctttcttttaaatcttgatcttgagctaaaaatgattctaattttttctgaaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgagctctttcttttaaatcttgatcttgagctaaaaatgattctaattttttctgaaca 611
Query: 485 tcaataagtttttctggattgattctttttaataaaaaaa--taatggttaattaaaa-g 541
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct: 612 tcaataagtttttctggattgattctttttaataaaaaaaaataatggttaactaaaaag 671
Query: 542 gcaatctcatttttcaaaacagaaaataatacataacattttcttatgccccctcatttg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcaatctcatttttcaaaacagaaaataatacataacattttcttatgccccctcatttg 731
Query: 602 cttttaagtgtttaacatatttctcatgtatggaccaagaataaccataggaagaag 658
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 732 cttttaagtgtttaacatatttctcatctatggaccaagaataaccataggaagaag 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_o08.g1 MSMg01no269_o08.g1 CHROMAT_FILE:
MSMg01no269_o08.g1 PHD_FILE: MSMg01no269_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:26 2005
(611 letters)
>mm_chr9_53041111_53042120
Length = 1010
Score = 1114 bits (576), Expect = 0.0
Identities = 603/612 (98%), Gaps = 3/612 (0%)
Strand = Plus / Minus
Query: 1 tctccctgaaccattttcttagttcaagaattgatattctaaattttaattttttgtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tctccctgaaccattttcttagttcaagaattgatattctaaattttaattttttgtata 751
Query: 61 gtatgttttgttattaggtacacagaacatactacaaatagctattaaaattacttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gtatgttttgttattaggtacacagaacatactacaaatagctattaaaattacttaaat 691
Query: 121 tctgcatgtatgtttaagtgtgagaatattttaatgtaacatttctgaaaatggggtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tctgcatgtatgtttaagtgtgagaatattttaatgtaacatttctgaaaatggggtctg 631
Query: 181 gagaacaaacatcttttgataaggtgttaataaccacttccatcataaaggagggagaga 240
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 630 gagaacaaacatcttttgataaggtgttaataatcacttccatcgtaaaggagggagaga 571
Query: 241 agatcagtttatgatagtagcaatactgagt-caaagtcaaatgttgttggcagtggtct 299
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct: 570 agatcagtttatgatagtagcaatactga-tccaaagtcaaacgttgttggcagtggtct 512
Query: 300 gggttttattagagatgtctgcttaggcaaaaagaattcatggttttgatgcagaaaata 359
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 511 gggttttattagagatgtctgcttaggcaaacagaattcgtggttttgatgcagaaaata 452
Query: 360 gtttcagcactggatgttacaaagcagtttattaaaagagatgtataatatagattttca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtttcagcactggatgttacaaagcagtttattaaaagagatgtataatatagattttca 392
Query: 420 gtatgaggttaagagaaggaggcatccaggaaaaataagatattaaagtgtggctttatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtatgaggttaagagaaggaggcatccaggaaaaataagatattaaagtgtggctttatg 332
Query: 480 tggttatttgggcttctcaaaggagagtagcacttcattgtctatacaatttgggtgatt 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 331 tggttatttgggcttctcaaaggagagtagcacttcgttgtctatacaatttgggtgatt 272
Query: 540 tttgaatttattgtcttcaaagagtttccaaggaacttaatgaggtcacagggtatttcc 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 271 tttgaatttattgtcttcaaagagtttccaa-gaacttaatgaggtcacagggtatttcc 213
Query: 600 taaggtagtgac 611
||||||||||||
Sbjct: 212 taaggtagtgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
