XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTCTCTTAGGAGAAGACTAATTTTAGTTGTATCTTACTTTTTCTTCTGTC
CAACAAAACCTGGCACATAGAATTTCAAGCTAATGATATATTATATTCAG
GGAACATTTAATTTAACATTTAGATTATACAGCCATAGTCTTTGACTTAA
TTTTTCTCTCTGTAACATCCCAACGCTCCCCCACCCCCATCTCCTACTTT
TGTAGCAGTGAAAATGTGGTGTGTCTTAATAGTTTCTATGGCGGGCTACT
TGTGTCTCAGAATGCCAGGCTGTACCAATGTGTGTCCATGGTGCCAAACC
TGAATTATCCCATTGTTAATGAGCTGCTGTGTTTTCATGTTTTGCAGTGA
AACACAGACATCCAAGCTACAAACTAAACCTCAAGTTTATATTATCTTTT
CTTTTTCTTTCTTTCCTATTTGTTTGTTTGGTTTTCTTTCTGCAATTACT
GTTGCCAAAGACTCTAGCTTTCTTTTTGTTCCTTTGGCTATCTCTTTTCT
ATACAGTATAGAACAGGAAGGTCTATCTTTTAAGGCAATGGAACCTGGAA
TTCTCCCCCACTGCGGATGTAAACTTAATAAAAGTTAAGTTGTAAGAGAT
GGAAATGGACAGGAGAGAGAGTCCAACACTGCAGACAGGTCAAGTATCCC
TGAGCATTGGAAGTGTCTGGCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCCCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACACCCACTCTGGAA
ATCCGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTAGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTATACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAACATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAG

Query= MSMg01no270_h02.b1 MSMg01no270_h02.b1 CHROMAT_FILE:
MSMg01no270_h02.b1 PHD_FILE: MSMg01no270_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:05 2005
         (684 letters)



>mm_chr9_81914239_81915322
          Length = 1084

 Score = 1180 bits (610), Expect = 0.0
 Identities = 659/680 (96%), Gaps = 9/680 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctcttaggagaagactaattttagttgtatcttactttttcttctgtccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctcttaggagaagactaattttagttgtatcttactttttcttctgtccaa 264

                                                                       
Query: 65  caaaacctggcacatagaatttcaagctaatgatatattatattcagggaacatttaatt 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaacctggcacatagaattccaagctaatgatatattatattcagggaacatttaatt 324

                                                                       
Query: 125 taacatttagattatacagccatagtctttgacttaatttttctctctgtaacatcccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taacatttagattatacagccatagtctttgacttaatttttctctctgtaacatcccaa 384

                                                                       
Query: 185 cgctcccccacccccatctcctacttttgtagcagtgaaaatgtggtgtgtcttaatagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgctcccccacccccatctcctacttttgtagcagtgaaaatgtggtgtgtcttaatagt 444

                                                                       
Query: 245 ttctatggcgggctacttgtgtctcagaatgccaggctgtaccaatgtgtgtccatggtg 304
           ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 445 ttctatggcaggctacttgtgtctcagaaggccaggctgtaccaatgtatgtccatggtg 504

                                                                       
Query: 305 ccaaacctgaattatcccattgttaatgagctgctgtgttttcatgttttgcagtgaaac 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 ccaaacctgaattatcccattgttaattagctgctgtgttttcatgttttgcagtgaaac 564

                                                                       
Query: 365 acagacatccaagctacaaactaaacctcaagtttatattatcttttctttttctttctt 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagacatccaagctacaaactatacctcaagtttatattatcttttctttttctttctt 624

                                                                       
Query: 425 tcctatttgtttgtttggttttctttctgcaattactgttgccaaagactctagctttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcctatttgtttgtttggttttctttctgcaattactgttgccaaagactctagctttct 684

                                                                       
Query: 485 ttttgttcctttggctatctcttttctatacagtatagaacaggaaggtctatcttttaa 544
           |||||||||||||||||||||||  ||||||| ||||||||||       ||||||| ||
Sbjct: 685 ttttgttcctttggctatctctt--ctatacaatatagaacag-------tatctttcaa 735

                                                                       
Query: 545 ggcaatggaacctggaattctcccccactgcggatgtaaacttaataaaagttaagttgt 604
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 736 ggcaatgaaacctggaattctcccccactgcagatgtaaacttaataaaagttaagttgt 795

                                                                       
Query: 605 aagagatggaaatggacaggagagagagtccaacactgcagacaggtcaagtatccctga 664
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 796 aagagatggaaatggacaggagagagagtccaacactgcagacagttcaagtatccctga 855

                               
Query: 665 gcattggaagtgtctggctg 684
           ||||||| ||||||||||||
Sbjct: 856 gcattggcagtgtctggctg 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)