Query= MSMg01no270_l15.b1 MSMg01no270_l15.b1 CHROMAT_FILE:
MSMg01no270_l15.b1 PHD_FILE: MSMg01no270_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:27 2005
(464 letters)
>mm_chr9_121462890_121463753
Length = 864
Score = 487 bits (252), Expect = e-142
Identities = 258/260 (99%)
Strand = Plus / Minus
Query: 1 tctgctggaatatgcattccactctttgtaggaagtggtcttatgcaaactctttacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctgctggaatatgcattccactctttgtaggaagtggtcttatgcaaactctttacctg 401
Query: 61 tttggttcctctgtttgcccacactgtaaatggaaatgtgcctaggtcttaggattcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttggttcctctgtttgcccacactgtaaatggaaatgtgcctaggtcttaggattcttg 341
Query: 121 tgctctgtgcctttgaggagagcgcagttaaatcccaggggactgtaggtaatccaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgctctgtgcctttgaggagagcgcagttaaatcccaggggactgtaggtaatccaggtt 281
Query: 181 ggtttgtttgactgattgattttataaatgttacacactggacaggcaatactttttgta 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 280 ggtttgtttgactgattgattttataaatgttacacactgaacaggcaatactttttgta 221
Query: 241 aaaatatttttatattgaag 260
|||||||||| |||||||||
Sbjct: 220 aaaatattttcatattgaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_l15.g1 MSMg01no270_l15.g1 CHROMAT_FILE:
MSMg01no270_l15.g1 PHD_FILE: MSMg01no270_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:27 2005
(362 letters)
>mm_chr9_121277557_121278319
Length = 763
Score = 694 bits (359), Expect = 0.0
Identities = 362/363 (99%), Gaps = 1/363 (0%)
Strand = Plus / Plus
Query: 1 caggctgacttctggccatcatgggaacatatacatacatgcatgtttacagaaatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctgacttctggccatcatgggaacatatacatacatgcatgtttacagaaatacac 260
Query: 61 atacatgaacacattaaagcaaaacaaccagaactccacacccctct-cccccccccccc 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 atacatgaacacattaaagcaaaacaaccagaactccacacccctctgcccccccccccc 320
Query: 120 cgccttcaccccaaagtcgccacacgaggaatccgtcccttatcacaaacacttaatcac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgccttcaccccaaagtcgccacacgaggaatccgtcccttatcacaaacacttaatcac 380
Query: 180 caaatggggcatcttagcctcctcaggcttaaataaaacatgaggcccttcttgaacatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatggggcatcttagcctcctcaggcttaaataaaacatgaggcccttcttgaacatt 440
Query: 240 tcattcatttagcttaaagtatggtttagtaattctaggaatgtatttttaatacttccc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattcatttagcttaaagtatggtttagtaattctaggaatgtatttttaatacttccc 500
Query: 300 tttgacaagttataatctaagtgatatttactggaccatgaaggaaacaggaaggagtgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgacaagttataatctaagtgatatttactggaccatgaaggaaacaggaaggagtgg 560
Query: 360 aca 362
|||
Sbjct: 561 aca 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space: 266162
Effective search space used: 266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
