Query= MSMg01no271_b12.b1 MSMg01no271_b12.b1 CHROMAT_FILE:
MSMg01no271_b12.b1 PHD_FILE: MSMg01no271_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:54 2005
(316 letters)
>mm_chr9_83312900_83313614
Length = 715
Score = 542 bits (280), Expect = e-158
Identities = 304/312 (97%), Gaps = 1/312 (0%)
Strand = Plus / Plus
Query: 5 gaattctctggaggctggggtcagaagtgataccctcaggagaaagggaggaaggtgtgg 64
|||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct: 205 gaattctctggagggtggggtcagaagtgacaccctcgggagagagggaggaaggtgtgg 264
Query: 65 tggcagatgtgcacattttccacctcagcacaggaaggtccctgagtgcatgttaaatac 124
||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 265 tggcagatgtg-acattctccaccttagcacaggaaggtccctgagtgtatgttaaatac 323
Query: 125 tgaccccagcacaactctaatgacacataagcagttcaggttagatcccagactttgaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaccccagcacaactctaatgacacataagcagttcaggttagatcccagactttgaga 383
Query: 185 cacaagcttataagtccactatcctaagacttgggccatttctaaaaccacattgtttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacaagcttataagtccactatcctaagacttgggccatttctaaaaccacattgtttct 443
Query: 245 tagtgtgcataaaacactcaactgaaaatctatttttacaatagaaataagccttgaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagtgtgcataaaacactcaactgaaaatctatttttacaatagaaataagccttgaatt 503
Query: 305 gaaaagaaaact 316
||||||||||||
Sbjct: 504 gaaaagaaaact 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space: 216742
Effective search space used: 216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_b12.g1 MSMg01no271_b12.g1 CHROMAT_FILE:
MSMg01no271_b12.g1 PHD_FILE: MSMg01no271_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:54 2005
(281 letters)
>mm_chr9_83488246_83488927
Length = 682
Score = 375 bits (194), Expect = e-108
Identities = 250/288 (86%), Gaps = 35/288 (12%)
Strand = Plus / Minus
Query: 1 tatcctggtctcagagagtgcaggacagccccaggatgacacccagaaactgttgtctca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 634 tatcctggtctcagagagtgcaggacagccccaggatgacacagagaaactgttgtctc- 576
Query: 61 aaaaaaaaaatgaaaaaataaaacagcaacaaaaaacaaaagagaaataaggccaggaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ---aaaaaaatgaaaaaataaaacagcaacaaaaaacaaaagagaaataaggccaggaga 519
Query: 121 aagcttttcatgatcagtacagatgtgatgccccccacctgagtatttttcaaactgtga 180
||||||||||||||||||||||||||||| |||| || ||||||
Sbjct: 518 aagcttttcatgatcagtacagatgtgattcccc----------at--------ctgtga 477
Query: 181 ccaaacaaatcataaacgtgaaaggtacagacacaggggtaaaacacaatgtgaatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccaaacaaatcataaacgtgaaaggtacagacacaggggtaaaacacaatgtgaatttat 417
Query: 241 aattt---ttttttta----ctagctacctattttgctaccttaaatt 281
||||| | | ||||||||||||||||||||||||||||
Sbjct: 416 aatttaaat------aaaaactagctacctattttgctaccttaaatt 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space: 183056
Effective search space used: 183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
