BAC Information

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BAC

Clone NameMSMg01-271C20
Chromosome9 (Build37)
Map Location 54,604,716 - 54,604,953
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61
Downstream geneCrabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271C20.T7 (MSMg01no271_c20.b1)MSMg01-271C20.TJ (MSMg01no271_c20.g1)
ACCAG410804
length756751
length of high quality
(start - end)
---238 (122 - 359)
definitionCHROMAT_FILE: MSMg01no271_c20.b1 PHD_FILE: MSMg01no271_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:00 2005CHROMAT_FILE: MSMg01no271_c20.g1 PHD_FILE: MSMg01no271_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCAAN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCGAAATATCTCACACAGCAGCTCAGTCTAGGACCTGTGATT
CTGTGTTTCTAAGATGTCCCCAGGTGGTGTTGATGCCATCTGGCTATCGC
CCACAGCGTGTAGGCCATCAGGAATCCATCCAGTTCAGACTGAAGGGTCT
CTGCTCTTCCTTGCACAGTAGACAATTCAAACGTCACCAACATGGCAGGC
CTGCTGCTAGCCCATCAACCAAGGAGACTTGGATTCTTCTCATCCATTCT
GCAGCTTCAGTGAGTCGGGCTTTGTTAAGCCCTCAGACTTCCTGCCTCAC
AGGGAGGCATTTGTACTGCCACAAGGCAGTCTCCACCTCCACTGCTCAGT
GGGGGCAGCAGCCGCCCGAAGGGACCAAGAGAGCTTGGTGGGGTGGAAAG
GGGGTCTAGAGAGGTTTTTTTTTTTTTTTTTGACTGGCATCCAGACTTGG
CTTGTTATTAGATTGACTATTGATTGTTATGGCTGTTACAATAACTACCC
TGACCTGTACGGCTTATTTTTAATCTCCGGATGCTGACGAGTGATATTTC
GTACACTCAGGACCGTTTCCCTTTGACTTGGATTTTTCGCCATTCTGTCG
CCGCTTTTCTCCCTTGGCTTGCGGTACGTTATTTTCACCTTTCCCGCCTA
CGCCATTTTTCTCCTTTTTTTGCCTCCCCCGCCTCTTTTCTCATTTTCCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_c20.g1 MSMg01no271_c20.g1 CHROMAT_FILE:
MSMg01no271_c20.g1 PHD_FILE: MSMg01no271_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:00 2005
         (238 letters)



>mm_chr9_54604516_54605153
          Length = 638

 Score =  414 bits (214), Expect = e-120
 Identities = 232/238 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtggtgttgatgccatctggctatcgcccacagcgtgtaggccatcaggaatccatcc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aggtggtgttgatgccatctggctatcgcccacagcgtgcaggccatcaggaatccatcc 260

                                                                       
Query: 61  agttcagactgaagggtctctgctcttccttgcacagtagacaattcaaacgtcaccaac 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 agttcagactgaagggtctctgctctttcttgcacagtagacaattcaaacgtcaccaac 320

                                                                       
Query: 121 atggcaggcctgctgctagcccatcaaccaaggagacttggattcttctcatccattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcaggcctgctgctagcccatcaaccaaggagacttggattcttctcatccattctg 380

                                                                     
Query: 181 cagcttcagtgagtcgggctttgttaagccctcagacttcctgcctcacagggaggca 238
           ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 381 cagctccagtgagtcaggctttgctaagccctcagacttcctgcctcacaggggggca 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)