BAC Information

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BAC

Clone NameMSMg01-271K22
Chromosome9 (Build37)
Map Location 49,518,906 - 49,670,344
singlet/doubletdoublet
Overlap geneNcam1
Upstream geneZbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12
Downstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271K22.T7 (MSMg01no271_k22.b1)MSMg01-271K22.TJ (MSMg01no271_k22.g1)
ACCAG411166AG411167
length763751
length of high quality
(start - end)		323 (38 - 360)679 (68 - 746)
definitionCHROMAT_FILE: MSMg01no271_k22.b1 PHD_FILE: MSMg01no271_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:36 2005CHROMAT_FILE: MSMg01no271_k22.g1 PHD_FILE: MSMg01no271_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,518,906 - 49,519,224)(49,669,777 - 49,670,344)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
GAGGGCCCAGTTCTCTGGGTGGGAGGGGATGGGCACCACCGCAAAACTCT
GTTCCGATTAAGCGCAAGATGGAAATTCAGCTCACATTTCATTAACAAGA
ACTTCAAGACATACCAAATCTGCTTCCCGCAGAACAAGGGTCCTTCAAAC
TCCATTTTAATTAGCCGGGTTTCAAAGGAAAAGTCCTTTACCCATTTATT
CTTTAAAAAGGAAGTGCAGGTTTTCCTCCATTTGAAATTGCTTTATTGAC
TCCAGTTGCAACAATTCCCTCAGGTAGGTACCACCAGCGCATCCAATTCA
ACCAAGGGCTGTTTTCTATTACCCCCCCCCCAACAACTCACTCCCTGCAC
AGACTCAGTCCCAAATGAAATCCCCATGATATTGAATTGAACGTCCTTCC
AAGAGAAAAACGTATAAGACCTTTCATCAAAGCGTGCACCTTGCTGCTCT
AGAGACCTAAGAGTTCTCAGATCCTTAGGAGCACTGTGTCTCCAAGGTGA
TAAACTCAACCCTCGAGTCCACATTGGTACCACCCTTCAGGAGAGCAATT
TGTAATAGGTATCAAAAGTCTCAAAGATCTTTGTTTACACCTTTAGATAC
AGCTATTCTACTGAAGGAATTAATTTATATTAAGAAAATTAGTCTAGAAA
ACGGCAAAGACCTTCATTTGTGATGTTTTTTAGAGGGAGGAATTTCTAAG
TAATTATATTAAN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATAACCAGATCCCCGGGCAGGGCTGAAGTGAG
AGTGATGAGAATTCGAGCCAGAGCTAACGGTCACGTTCATGTTCACCAGC
TTTTGGGGCAGATCCTAGCCAAAGGGAGCTTTGAGTCCAAAGGGCAGAAT
GAAGTGCTCTCTGCTAAAGCGTGAGCTGAGGTGCATCCGTGCTGCAGGTT
TTGGTTTTCTTAAGATTTTTATTTTCAAGTATGTGCATCTGTGGATGGGT
ATGTGCACCAGTGGCTGGTGCCTTATAGTGCCCAGCACATCAGATCTCCT
AGTGCTGGAGCTACAGGGGTTTCTGAGCTATCCTGTGTAGAGCTGAGAAA
CAAAACTCGTATCCTCTGCAAGAGCAGTATATGCTTCTGACCTCTTCACC
TTCTCTCCAGCTCCCGTTTTAGTTTCCCCAAAGGATTCAATCAAAGCCAT
TGTCTGATCTTTACAAGGAAAATCTCCATGAACCACTTTAAACCAGGACA
AGATTTGTACATCGTCTCAAACTCGACATCACATTTTTCTTAAGTCCAGT
CATCATTTCCTAGTTGCCAGGGCTTCCTTTGAGCCACCCTGCCTGCCTCT
GTTCAGCCCCTCTCCTTCTTCGTTTGCCTTACCCTCCTTCCCTCTCTCTC
TGCCCTTTCTTCCCTTTTGATTTTTATGAAGCACTTCACCCTCCAATCTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_k22.b1 MSMg01no271_k22.b1 CHROMAT_FILE:
MSMg01no271_k22.b1 PHD_FILE: MSMg01no271_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:36 2005
         (323 letters)



>mm_chr9_49518702_49519424
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgagggcccagttctctgggtgggaggggatgggcaccaccgcaaaactctg 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcagtgagggcccagttctctgggtgggaggggatgggcacctccgcaaaactctg 264

                                                                       
Query: 65  ttccgattaagcgcaagatggaaattcagctcacatttcattaacaagaacttcaagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccgattaagcgcaagatggaaattcagctcacatttcattaacaagaacttcaagaca 324

                                                                       
Query: 125 taccaaatctgcttcccgcagaacaagggtccttcaaactccattttaattagccgggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taccaaatctgcttcccgcagaacaagggtccttcaaactccattttaattagccgggtt 384

                                                                       
Query: 185 tcaaaggaaaagtcctttacccatttattctttaaaaaggaagtgcaggttttcctccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaaggaaaagtcctttacccatttattctttaaaaaggaagtgcaggttttcctccat 444

                                                                       
Query: 245 ttgaaattgctttattgactccagttgcaacaattccctcaggtaggtaccaccagcgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgaaattgctttattgactccagttgcaacaattccctcaggtaggtaccaccagcgca 504

                              
Query: 305 tccaattcaaccaagggct 323
           |||||||||||||||||||
Sbjct: 505 tccaattcaaccaagggct 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no271_k22.g1 MSMg01no271_k22.g1 CHROMAT_FILE:
MSMg01no271_k22.g1 PHD_FILE: MSMg01no271_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:36 2005
         (679 letters)



>mm_chr9_49669266_49670344
          Length = 1079

 Score = 1044 bits (540), Expect = 0.0
 Identities = 561/568 (98%)
 Strand = Plus / Minus

                                                                        
Query: 110  agctttgagtccaaagggcagaatgaagtgctctctgctaaagcgtgagctgaggtgcat 169
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1079 agctttgagtccaaagggcagaatgaagtgctctcagctaaagcgtgagctgaggtgcat 1020

                                                                        
Query: 170  ccgtgctgcaggttttggttttcttaagatttttattttcaagtatgtgcatctgtggat 229
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ccgtgctgcaggctttggttttcttaagatttttattttcaagtatgtgcatctgtggat 960

                                                                        
Query: 230  gggtatgtgcaccagtggctggtgccttatagtgcccagcacatcagatctcctagtgct 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  gggtatgtgcaccagtggctggtgccttatagtgcccagcacatcagatctcctagtgct 900

                                                                        
Query: 290  ggagctacaggggtttctgagctatcctgtgtagagctgagaaacaaaactcgtatcctc 349
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 899  ggagctacaggggtttctgagctgtcctgtgtagagctgagaaacaaaactcgcatcctc 840

                                                                        
Query: 350  tgcaagagcagtatatgcttctgacctcttcaccttctctccagctcccgttttagtttc 409
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 839  tgcaagagcagtatatgcttctgacctcttcaccttctctccagctcctgttttagtttc 780

                                                                        
Query: 410  cccaaaggattcaatcaaagccattgtctgatctttacaaggaaaatctccatgaaccac 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  cccaaaggattcaatcaaagccattgtctgatctttacaaggaaaatctccatgaaccac 720

                                                                        
Query: 470  tttaaaccaggacaagatttgtacatcgtctcaaactcgacatcacatttttcttaagtc 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  tttaaaccaggacaagatttgtacatcgtctcaaactcgacatcacatttttcttaagtc 660

                                                                        
Query: 530  cagtcatcatttcctagttgccagggcttcctttgagccaccctgcctgcctctgttcag 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  cagtcatcatttcctagttgccagggcttcctttgagccaccctgcctgcctctgttcag 600

                                                                        
Query: 590  cccctctccttcttcgtttgccttaccctccttccctctctctctgccctttcttccctt 649
            ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 599  cccctctccttcttcctttgccttaccctccttccctttctctctgccctttcttccctt 540

                                        
Query: 650  ttgatttttatgaagcacttcaccctcc 677
            ||||||||||||||||||||||||||||
Sbjct: 539  ttgatttttatgaagcacttcaccctcc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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