BAC Information

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BAC

Clone NameMSMg01-271M06
Chromosome9 (Build37)
Map Location 40,487,096 - 40,607,221
singlet/doubletdoublet
Overlap gene9030425E11Rik, LOC100043076, LOC100043071
Upstream geneOlfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
Downstream geneHspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271M06.T7 (MSMg01no271_m06.b1)MSMg01-271M06.TJ (MSMg01no271_m06.g1)
ACCAG411228AG411229
length741741
length of high quality
(start - end)
318 (44 - 361)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no271_m06.b1 PHD_FILE: MSMg01no271_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:43 2005CHROMAT_FILE: MSMg01no271_m06.g1 PHD_FILE: MSMg01no271_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,487,096 - 40,487,409)(40,606,940 - 40,607,221)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATGAACTCCACTTCAGCTTTAGTTGGAACAAATATTTACCAAGTTC
CGTATGTGGTAGACGCTGCAGAAGGCGCCTTCACTGCAGTCATTTCTTCA
CCGTAGTCATTTCTTCACCATAGCCGTGCTAGGGCAGAGGAGAGGAAGGT
ACTGGGAAATCTAGGGACCTATTCATAAATACCAAGCCTGCCGCCTCCCA
CCCAGTACCCTTCCCATCACCTACAGCTACATCCCCTCAAACATCCTTAC
GAGCTTGGACCTCATCTGTGAGGCTAGAACACAGGTGGATCCAGGACCTC
AAAGGCACTGTTTTATACCCCTGTCGTGCGGGCGTCTCTCAGCTGGAGTG
TATTAGTCCAGCATATACGATGCTCAGAGGATTGTCCTGGATGTTGGGTG
GGAGGGACATGCTCTCTATATAGTTCCCAGTGGGGTGGGAAAATATAAGC
TCTTTATCTTGCTAATGTGTCCCTCTCCAGCTCAGTTTGCAGACGTTTGT
TTATTTTACAACCACCCTAGATTGTTTATCGGGTATGAATTTTGCAAACA
TCACTATGTTCGCACTAACAGTGGACCTAGAAAGTGTCGAGCCTTTTACA
AGCCATGTGGCATGGCAAGAGTCATCAATAGTGTAAGCAGCCTGTGGCCC
CTTTCAAGGCCACGACTCTTGAAACCTATAAGTATCTGGCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATTAACAACTCCTTAGTACCCTTC
TACCTTCCCAGCCATGAGCCTGCAAGCTTCCAGGAATCTCACCAGAAACC
CCATCTACAGGGAAAAGACTTGACTAACTCTAGTGAAGTCTTTTTGTTTG
TTTGGTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGG
CTGTCCTGGAACTCACTTTGTAGACCAGGCTGGTCTGGAATTTAGGAATT
GGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGGGTCACCATG
CCCGGCTTCTTTTGAGTCCCACCCCCCCCCAGGCTTCACTTTATCAGATG
ACCATTCCAGCCGAGGCATCTCAGGAGCCAACCTATAATCTCACTTATCA
AGAGACAGAAAAGGAGGAGGGGACATTTGAGGCCCTGCAAGACAGGGGGT
TGTAGATTAGTGCAGTCTCAGCTTCCCTCTGCAGAGAATGCCGGTTAGGT
TAATGCTGAGTTCAATCGACTGATAGGTGCTCAACCTTACAGGGATGTCG
TATCACCTCCCAGACTCAGGAAGCATGAGGGAAGAGGGGGTTGAAAGAAG
AAAGAGGTTGAGGATTATGACATCCTGGGCATGACATGGCAGTGGCACTC
CGGAGTCTGTGGCTGCCCTCACTGCATGTGATCCTCTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_m06.b1 MSMg01no271_m06.b1 CHROMAT_FILE:
MSMg01no271_m06.b1 PHD_FILE: MSMg01no271_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:43 2005
         (318 letters)



>mm_chr9_40486893_40487610
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatgaactccacttcagctttagttggaacaaatatttaccaagttccgtatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatgaactccacttcagctttagttggaacaaatatttaccaagttccgtatg 263

                                                                       
Query: 64  tggtagacgctgcagaaggcgccttcactgcagtcatttcttcaccgtagtcatttcttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggtagacgctgcagaaggcgccttcactgcagtcatttcttcaccgtagtcatttcttc 323

                                                                       
Query: 124 accatagccgtgctagggcagaggagaggaaggtactgggaaatctagggacctattcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accatagccgtgctagggcagaggagaggaaggtactgggaaatctagggacctattcat 383

                                                                       
Query: 184 aaataccaagcctgccgcctcccacccagtacccttcccatcacctacagctacatcccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaataccaagcctgccgcctcccacccagtacccttcccatcacctacagctacatcccc 443

                                                                       
Query: 244 tcaaacatccttacgagcttggacctcatctgtgaggctagaacacaggtggatccagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaacatccttacgagcttggacctcatctgtgaggctagaacacaggtggatccagga 503

                         
Query: 304 cctcaaaggcactg 317
           ||||||||||||||
Sbjct: 504 cctcaaaggcactg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no271_m06.g1 MSMg01no271_m06.g1 CHROMAT_FILE:
MSMg01no271_m06.g1 PHD_FILE: MSMg01no271_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:43 2005
         (282 letters)



>mm_chr9_40606885_40607566
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattaacaactccttagtacccttctaccttcccagccatgagcctgcaagcttccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaattaacaactccttagtacccttctaccttcccagccatgagcctgcaagcttccagg 278

                                                                       
Query: 61  aatctcaccagaaaccccatctacagggaaaagacttgactaactctagtgaagtctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatctcaccagaaaccccatctacagggaaaagacttgactaactctagtgaagtctttt 218

                                                                       
Query: 121 tgtttgtttggttttgtttttgttttttgagacagggtttctctgtgtagccctggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgtttgtttggttttgtttttgttttttgagacagggtttctctgtgtagccctggctgt 158

                                                                       
Query: 181 cctggaactcactttgtagaccaggctggtctggaatttaggaattggcctgcctctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cctggaactcactttgtagaccaggctggtctggaatttaggaattggcctgcctctgcc 98

                                                     
Query: 241 tcccaagtgctggaattaaaggcgtgggtcaccatgcccggc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tcccaagtgctggaattaaaggcgtgggtcaccatgcccggc 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)