BAC Information

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BAC

Clone NameMSMg01-273N16
Chromosome9 (Build37)
Map Location 59,627,176 - 59,627,463
singlet/doubletsinglet
Overlap geneMyo9a
Upstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385
Downstream geneLOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N16.T7 (MSMg01no273_n16.b1)MSMg01-273N16.TJ (MSMg01no273_n16.g1)
ACCAG412746AG412747
length722719
length of high quality
(start - end)
338 (385 - 722)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no273_n16.b1 PHD_FILE: MSMg01no273_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:18 2005CHROMAT_FILE: MSMg01no273_n16.g1 PHD_FILE: MSMg01no273_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTACAATACCAGAACTGTACATATCACCCAGCATGCCATGGGCAC
CATTATAAACAAGCAGGATAACCGAAGATTCTTGTAAAGAGAGATGATCT
AAGAACTGAGCCTATTAAGCACTCTAGGAGACAGCCCCCTTAAACAGGTG
ATGGGAAATGATCAGGAAAACAAAACAAAACAAAACAAAACCCACAAAAT
AGCTGAAGCACCACTGCTCTACCAAGAGAAATACACTGTATAAGAACAAA
CAGAAAGGTTAGGTGCTAAAGCCCATGGCCTATAAACTTAAGACTTAAGT
GTACAAAGAGATTTTATTGGACACCCCCCGCCCCATGTTTTTCTTAAAAG
CAAATTGCTTAAAATTTAGTATATAAATTATTAAATAAAATCATTGAAAT
TATTATATTACTTAGGGCTGGAGAAATGGCTCAGCTGTTGACAGCATTGG
CTGCTCTTCCAGAGAAGCCAGGTTTGTTGCCTAGCACCCACATGGCAGCT
CACAGCTATCTAAATCACCAGTTCCAGGAGAATCTGACACCCTCATAGAA
ACACACATTCAGGCAAAACACTGTTGCCTATAAAATTAAATAATCTTTTA
AAAACTGAAACAAAGAAACTTCTATTTCTTTATATACCTCATACATACCT
TATGTCCAAATCTGAAGACTTC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATAAATTCATTGTTTTTAATAGCTGAG
TAGTACTCCATTGTGTAAATGCAATACTTGTTCTTATACAGTGAGTTTAT
GTTCAGAAAGCTGTAGTCAATATGGTTGTTAAAGCTTTCATTTTTGAAAA
CAATATTCAATGTGACTGCTCAGTGTTTCTATCTTTTGTGTTCCAGTTCT
TTTGCCAAGAAAATGGTTTGCCCAGTCCTGACCACATACTGTCCTTTCTG
ATGGGACAAGATCCAATATGAATGTAAGTGATGGAGGAAGACGACGCTTT
GAGGATAATGTTTTTTTATTGCCCCCCCCCCCTGGGACAATTTCAGAAGG
AACAATTTACTGTCCAATTCCTGCCAGAAAAAATTCCACAGCTGCTGAGG
TGATTGACTCCCTTATAAACAGACTTCACCTAGACAAGACAAAATGCTAT
GTTTTAGCAGAGGTAAAGGAATTTGGTGGAGAAGAATGGATACTCAATCC
AACCGACTGTCCAGTTCAGCGAATGATGTTGTGGCCCCGAATGGCTTTGG
AAAATCGCTTGAGTGGAGAGGACTACCGTTTTCTTCTGCGAGAAAAAAAC
CTTGATGGGTCAATTCATTATGGTAGCCTCCAATCATGGCTACGGGTAAC
CGAAGAACGCCGCATGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n16.g1 MSMg01no273_n16.g1 CHROMAT_FILE:
MSMg01no273_n16.g1 PHD_FILE: MSMg01no273_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:18 2005
         (291 letters)



>mm_chr9_59626976_59627666
          Length = 691

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaattcattgtttttaatagctgagtagtactccattgtgtaaatgcaatacttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cataaattcattgtttttaatagctgagtagtactccattgtgtaaatgtaatacttgtt 260

                                                                       
Query: 61  cttatacagtgagtttatgttcagaaagctgtagtcaatatggttgttaaagctttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatacagtgagtttatgttcagaaagctgtagtcaatatggttgttaaagctttcatt 320

                                                                       
Query: 121 tttgaaaacaatattcaatgtgactgctcagtgtttctatcttttgtgttccagttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaaaacaatattcaatgtgactgctcagtgtttctatcttttgtgttccagttcttt 380

                                                                       
Query: 181 tgccaagaaaatggtttgcccagtcctgaccacatactgtcctttctgatgggacaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccaagaaaatggtttgcccagtcctgaccacatactgtcctttctgatgggacaagat 440

                                                           
Query: 241 ccaatatgaatgtaagtgatggaggaagacgacgctttgaggataatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatatgaatgtaagtgatggaggaagacgacgctttgaggataatg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)