BAC Information

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BAC

Clone NameMSMg01-274A19
Chromosome9 (Build37)
Map Location 57,254,406 - 57,254,936
singlet/doubletsinglet
Overlap genenone
Upstream geneC230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948
Downstream genePpcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A19.T7 (MSMg01no274_a19.b1)MSMg01-274A19.TJ (MSMg01no274_a19.g1)
ACCAG412888AG412889
length755765
length of high quality
(start - end)
531 (193 - 723)---
definitionCHROMAT_FILE: MSMg01no274_a19.b1 PHD_FILE: MSMg01no274_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:32 2005CHROMAT_FILE: MSMg01no274_a19.g1 PHD_FILE: MSMg01no274_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAT
CATTGCCATTTCCAAGGATGACTCTAATAAAGGCTCCGTGCCCCAGAGAT
GTTAAATGCCTGTCTCAGATCTAGGATCGTAGTGTGGGTGACTGAGGAAA
CTCACCTCATAGAATCAAGCTCTAGGAAAGGCGAGATATGGAGGTTTACT
ACTTAACAGGATAACCCCAGGTCTGTGTGTTCTCTCAGTCATGAGCACAC
ACACAAAAGTCCCATGATGATAAGCTCACACAGCTTAGGGCTGGAGAGAT
GGCTTGGCGGTTAAGAGCACTTAGTTTGATTCCCAGCGCCATATGGCAGC
CCATAGTCATACATAACTATAGACCAGTCATACATAACACATACGCAAAC
AAAACACCCACACATATAAATAAAACATTAAGGGGGATAAAGACCAATAT
CTTCCCACACAACTGGTCTAAAAGAATATCTGCGTGTCCCCTTGCATCTC
TCCTCCCTGGAACTTGCCAGCTGCTCCCTTGTGGTATTTTCAATAAATTC
CCTTTGTTCCTACACTGTAAATTCTTTTTAATGACTGTATCTCTGGCCTC
CCGTACTGTGCTTCATGGCTCTGAATTTGACCCTCAGCAACACAAAAACA
GAGACCCAGGTGTTGTGGTGCATGCCTGTAATCCCAGCACTTGGGATGCT
TGAAGAGGGAGGATCTCAAGTTCAAAGCCAGCCTGAGCTACATAGTTAGA
CCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGGAGATTATTGTTAAAGGACAAAGAAGCAA
AGGACTCCCTGAAACACAGAGTGAGGCCAAAGGTAGGCTAGATGAGAATT
GCCAGCAATGAAAGACCACATAACCAGATGCTTCACATTGTTGCTTAGTC
TTTATTCTGTCTTCCTTGAAACACTCTTACGCAATCCTGACTTTTCAATT
TTCAGTGCTTACGTTCATGACATTGATCTTGATATAAAAGTACACCACCC
TGAGCAACATATTCAATTCTAAGAACGCTTATTGTGAGACCAGCAACAGG
ATCTGGTGACTCTGAAAACTGTGGGTTCTTCCCTTTTAAATCCACAACTC
GCTCTCTTCATATGGCGATGTAATTATCATCATTTTCCCCTCCTCTTTCC
TTGCATACGAAAAAGTGGTTATCAACCTTCCTAAGTGTGAACTTTTATAC
TGGTCCTCATGATGTACTGACCCCCATCGATATAATGTATTTGTGTTGCT
ATTTCATAACTGTAATTTTGCAACTGATGAGAAATGTATTTTAAAGATAT
AGTATGCACGATATCTGATATGCGATCACAGACAGGTCCCTACCTACAGG
ATGAAACAGTTACTACAAAGCTTCCCATAAATCACATCCTACCCACTTTG
CAATTCAAGGGTTCTTACACATTAATTGCTAAAGGCATATATGCATACAC
TGACTCATACACGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a19.b1 MSMg01no274_a19.b1 CHROMAT_FILE:
MSMg01no274_a19.b1 PHD_FILE: MSMg01no274_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:32 2005
         (531 letters)



>mm_chr9_57254206_57255136
          Length = 931

 Score =  996 bits (515), Expect = 0.0
 Identities = 527/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtttactacttaacaggataaccccaggtctgtgtgttctctcagtcatgagcacacac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ggtttactacttaaccggataaccccaggtctgtgtgttctctcagtcacgagcacacac 260

                                                                       
Query: 61  acaaaagtcccatgatgataagctcacacagcttagggctggagagatggcttggcggtt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acaaaagtcccatgatgataagctcacacagcttggggctggagagatggcttggcggtt 320

                                                                       
Query: 121 aagagcacttagtttgattcccagcgccatatggcagcccatagtcatacataactatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagcacttagtttgattcccagcgccatatggcagcccatagtcatacataactatag 380

                                                                       
Query: 181 accagtcatacataacacatacgcaaacaaaacacccacacatataaataaaacattaag 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 accagtcatacataacacatacgcaagcaaaacacccacacatataaataaaacattaag 440

                                                                       
Query: 241 ggggataaagaccaatatcttcccacacaactggtctaaaagaatatctgcgtgtcccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggataaagaccaatatcttcccacacaactggtctaaaagaatatctgcgtgtcccct 500

                                                                       
Query: 301 tgcatctctcctccctggaacttgccagctgctcccttgtggtattttcaataaattccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatctctcctccctggaacttgccagctgctcccttgtggtattttcaataaattccc 560

                                                                       
Query: 361 tttgttcctacactgtaaattctttttaatgactgtatctctggcctcccgtactgtgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgttcctacactgtaaattctttttaatgactgtatctctggcctcccgtactgtgct 620

                                                                       
Query: 421 tcatggctctgaatttgaccctcagcaacacaaaaacagagacccaggtgttgtggtgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatggctctgaatttgaccctcagcaacacaaaaacagagacccaggtgttgtggtgca 680

                                                              
Query: 481 tgcctgtaatcccagcacttgggatgcttgaagagggaggatctcaagttc 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcctgtaatcccagcacttgggatgcttgaagagggaggatctcaagttc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)