BAC Information

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BAC

Clone NameMSMg01-274A20
Chromosome9 (Build37)
Map Location 57,254,587 - 57,254,949
singlet/doubletsinglet
Overlap genenone
Upstream geneC230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948
Downstream genePpcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A20.T7 (MSMg01no274_a20.b1)MSMg01-274A20.TJ (MSMg01no274_a20.g1)
ACCAG412890AG412891
length753754
length of high quality
(start - end)
363 (371 - 733)284 (67 - 350)
definitionCHROMAT_FILE: MSMg01no274_a20.b1 PHD_FILE: MSMg01no274_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:32 2005CHROMAT_FILE: MSMg01no274_a20.g1 PHD_FILE: MSMg01no274_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATA
GTCACTTGATGACCACCTGGAGTATATACCAGTCTCTGGTAACATATATC
TTATATATGCACCCGTACTCTGTACTCTAACTGCAGTTGACTTATGACCC
TATCCAAATGGCTAATCTCTAGAAAAGCCTAGGCTGTAAGGTTTACTACT
TAACAGGATAACCCCAGGTCTGTGTGTTCTCTCAGTCATGAGCACACACA
CAAAAGTCCCATGATGATAAGCTCACACAGCTTAGGGCTGGAGAGATGGC
TTGGCGGTTAAGAGCACTTAGTTTGATTCCCAGCGCCATATGGCAGCCCT
TATTTATACATACCCACCCACCAGTCATACATAACACATACGCAAACAAA
ACACCCACACATATAAATAAAACATTAAGGGGGATAAAGACCAATATCTT
CCCACACAACTGGTCTAAAAGAATATCTGCGTGTCCCCTTGCATCTCTCC
TCCCTGGAACTTGCCAGCTGCTCCCTTGTGGTATTTTCAATAAATTCCCT
TTGTTCCTACACTGTAAATTCTTTTTAATGACTGTATCTCTGGCCTCCCG
TACTGTGCTTCATGGCTCTGAATTTGACCCTCAGCAACACAAAAACAGAG
ACCCAGGTGTTGTGGTGCATGCCTGTAATCCCAGCACTTGGGATGCTTGA
AGAGGGAGGATCTCAAGTTCAAAGCCAGCCTGAGCTACATAGTTAGACCT
TGT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTGGAACTGCAGTTACAAACAGTTGTGAGTCAC
AGTCTGTGGGTGCTAGGAATCAAACCAAGGTTGTCTGGAAGAACAGCCAG
TGCTCTTGCACCACTGAGCCATGGCTCCAGACCCACTTTCAAACTTAAGA
CAATGTTCCTGTCCTACAGTAAGTTCTACCAGGTCCTCAAACTGGATGTG
GTGGGACGCACATTCCAGCACTCTGGAAATGGAGGCAGAAGAATTAGGAG
TTCAAGGACAGCCTCTGTTACACAGCAAATTAGAGACCAGCCTGGGATAT
TTGTCTTTCTACCTCCCCCCCCTCTTTGTGATTCTGAGAATTTCCAAATC
TCAGTCAAGCTGGAAGAGACCCTTTCTGGGAAGTGGCACAGGCCTTAGTG
TCTATGGAGGGAACCTCAGGTCACTGTTTGCACAAATCACTTTGCTGTCA
TCATCATCCTTCACACAGGAGGGAAATGTTCTGCATCCCGGGGAGGCAGC
CACAGCAACAAGATTGAGAAGCAATGTGTGAAAGCGAGACTGTGAGACTT
GGCAAGTCCAGGCTCTGAAAGCCTTCCTCTGTTCAGCGCCAGCACCCCCT
TCCACACCCCCTCCCGGGACCCAGCCCGCTCTGCTGTAATCTGGCAGAAT
GCTCAGAGAAAAGCAGCCCTGGTGTTTGCTTGGGTGGTCTGATTTTTAGC
GGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a20.b1 MSMg01no274_a20.b1 CHROMAT_FILE:
MSMg01no274_a20.b1 PHD_FILE: MSMg01no274_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:32 2005
         (363 letters)



>mm_chr9_57254387_57255149
          Length = 763

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtcatacataacacatacgcaaacaaaacacccacacatataaataaaacattaagg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtcatacataacacatacgcaagcaaaacacccacacatataaataaaacattaagg 260

                                                                       
Query: 61  gggataaagaccaatatcttcccacacaactggtctaaaagaatatctgcgtgtcccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggataaagaccaatatcttcccacacaactggtctaaaagaatatctgcgtgtcccctt 320

                                                                       
Query: 121 gcatctctcctccctggaacttgccagctgctcccttgtggtattttcaataaattccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatctctcctccctggaacttgccagctgctcccttgtggtattttcaataaattccct 380

                                                                       
Query: 181 ttgttcctacactgtaaattctttttaatgactgtatctctggcctcccgtactgtgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttcctacactgtaaattctttttaatgactgtatctctggcctcccgtactgtgctt 440

                                                                       
Query: 241 catggctctgaatttgaccctcagcaacacaaaaacagagacccaggtgttgtggtgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggctctgaatttgaccctcagcaacacaaaaacagagacccaggtgttgtggtgcat 500

                                                                       
Query: 301 gcctgtaatcccagcacttgggatgcttgaagagggaggatctcaagttcaaagccagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgtaatcccagcacttgggatgcttgaagagggaggatctcaagttcaaagccagcc 560

              
Query: 361 tga 363
           |||
Sbjct: 561 tga 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)