BAC Information

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BAC

Clone NameMSMg01-274K22
Chromosome9 (Build37)
Map Location 116,996,173 - 116,996,490
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneTgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274K22.T7 (MSMg01no274_k22.b1)MSMg01-274K22.TJ (MSMg01no274_k22.g1)
ACCAG413343AG413344
length761755
length of high quality
(start - end)
323 (38 - 360)294 (64 - 357)
definitionCHROMAT_FILE: MSMg01no274_k22.b1 PHD_FILE: MSMg01no274_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:16 2005CHROMAT_FILE: MSMg01no274_k22.g1 PHD_FILE: MSMg01no274_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
AGTGATCTGCAGAGTTCAAAATATAATGTCTCAAAGGAAATTTACTTCAC
CGCTGTCTCTGAGAGAGTCCACAGAACTAAGTGTTCTAATTCCATACTCA
TTCCCCATACTTTGGATTACACGGGACAGTGACTGTCATACAGATACTTG
TGTTTCAGTATTGCCTACTTCAGGGTTCACAATGTTATGAACAGCAAGAA
TCAAGTGTGCCTCTACATTGGGGCATGAAAGGATTTCTTACTGTTGAATG
CCTTTCTCCGTACAATTTTATTTCCCTTCACTGAAATTATAATATCTATC
AATTATCACTTTTTTTTTGGCCCCCTCCGACGATGGTTATTACAATCCAG
AGAGGCATGTCTCTTGTCATTGCTCCAAAATTCTGTCATCTATAATGGAA
GCCATGCTATGGAGTTACAAGGCCTAAAATTGCTGAGAGGTTCCTAATGT
TTTAAGTAAGTTTACAATTTTTTTGTTGGGCACATTCATAGCTATCCTGG
ATTGCATGCAGCCTGTGGGGGAGACAAAAGTGAACTGCAACACAGGACAA
AGTGTCTTCTGACCATTGAAATGAAGAACACATAGGCTGAAATGGGATTG
GAGACTGGTGCATTGCACAGAGGATAAAAAAAAGCACTTTGCAGTGTGTG
TGAGATGGTTTCCTGGTGAGGGATCTGTGTTTGCACATGTTGACAGGGAG
GAGCACGGAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCCCCAAATTCCTGGGGCTTGCCGACCAGCCAGCTTAGCCTCATCGG
CCAGGCCCATTATCCCCTGAAGGCTTTTTCCAAAAATATGAAGTGGACAG
CTCCTGAGGAAAAACACCCGAGGCTGGCCTCCAGCCTCCACCCACACATG
CAAGTACTAGAACACACACACACACTTCTCTCTCTGTCTCTCTGTCTCTC
TGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTG
TCTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTGTCTGTCTCTCTGTCTC
TCTGTCTTTCTGTCTCTCCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCGTACACACACATACCAAGAAGAAAGGAGGAGAGACAGAGATAGAGAGA
AGAAGGAGAGAGAGAAGCAAAAGCAAATAAAAATGTTGGTATTGCGCAGT
ATACTGTATCAACTGAGTTTCAGAACAAACGTATTAGCAGGGTCTGGATG
ATTTTAATAACTGAGAATGAAAATAGTTTATTTGGGTAAAAAGTTACTGT
GTATGTTCATTTTGGAGGCCCAGTGTCTGGGTTTGCAACTTACTTTAGTG
TTGTGACCCCCAGATTTCATTTCCTTATTTATATTTCACATTCCTCCTGT
CCAAAGAATGCTTTGCATATCTGATAACAATGTCTTTGGGGTCAGCGCGA
GACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_k22.b1 MSMg01no274_k22.b1 CHROMAT_FILE:
MSMg01no274_k22.b1 PHD_FILE: MSMg01no274_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:16 2005
         (323 letters)



>mm_chr9_116995970_116996691
          Length = 722

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%), Gaps = 1/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattagtgatctgcagagttcaaaatataatgtctcaaaggaaatttacttcac 63
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaactcattagtgatctg-agagttcaaaatataatgtctcaaaggaaatttacttcac 262

                                                                       
Query: 64  cgctgtctctgagagagtccacagaactaagtgttctaattccatactcattccccatac 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgctgtctctgagagagtctacagaactaagtgttctaattccatactcattccccatac 322

                                                                       
Query: 124 tttggattacacgggacagtgactgtcatacagatacttgtgtttcagtattgcctactt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttggattacacgggacagtgactgtcatacagatacttgtgtttcagtattgcctactt 382

                                                                       
Query: 184 cagggttcacaatgttatgaacagcaagaatcaagtgtgcctctacattggggcatgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagggttcacaatgttatgaacagcaagaatcaagtgtgcctctacattggggcatgaaa 442

                                                                       
Query: 244 ggatttcttactgttgaatgcctttctccgtacaattttatttcccttcactgaaattat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggatttcttactgttgaatgcctttctccgtacaattttatttcccttcactgaaattat 502

                              
Query: 304 aatatctatcaattatcac 322
           |||||||||||||||||||
Sbjct: 503 aatatctatcaattatcac 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)