BAC Information

Click to search

BAC

Clone NameMSMg01-274N10
Chromosome9 (Build37)
Map Location 58,666,953 - 58,667,221
singlet/doubletsinglet
Overlap genenone
Upstream geneArid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik
Downstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274N10.T7 (MSMg01no274_n10.b1)MSMg01-274N10.TJ (MSMg01no274_n10.g1)
ACCAG413456AG413457
length735743
length of high quality
(start - end)
272 (40 - 311)164 (68 - 231)
definitionCHROMAT_FILE: MSMg01no274_n10.b1 PHD_FILE: MSMg01no274_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:27 2005CHROMAT_FILE: MSMg01no274_n10.g1 PHD_FILE: MSMg01no274_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TATGCTCATCTTAAAATTCTTGTAGGGATGAAGAGGTGTTTTGTTATACA
GAACTGTTACCTCTGGTAAACCCTAGCTGGGTCCCCAAGGGAAATCTTCC
CTCAGGCATGAGCACTTACCCCACCCCCATAAGCCCTGCAGCAGCTAAGT
GGAATCAGCAGCAGCTTGTCTTGACCCTTCGATCAGGATCACCCCTCCAC
AGAAAACAGGAGTGAGGGTCTCCAGACTCATACGCAGCTCCACCTCTTTC
TCCTGTGAGGATCTGATCCTGCCCAGTGTACCTCCTGCTCAGCTACCCTA
GTTTGNGTAAGTGCCANNACCANGCCCCTTGAGGCTTCCTGCTGAATGCC
TGACTTGGATACCCGAAAAAAACAAAATACCTGGGAGGTGGAGGGACACA
TGACGTGGCTGCAGGGGGCCGGTTGTGGCTCATGTGCCGGAGAGTAAGTC
AGCTGGCTAATTCTGTCCAAGCCTTGGGTGACCCATTGTGTGCCCATCCT
TCCAGAGCCGGCGCTTGAGAAGGTTGATAGTATCCTCGCTGGTTGATACT
TGAGGCCTTTCCCAGAGGGATGGCTGAGGACTACACGTAGGATTCCCTAT
TGTTCCGTAAATGGCTCTCTCCATTATGCCCACCCTGCAATTTCTGCATG
AAGTAGCACGTGAGATGTTAGCGTCATCTTCCGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTAGACCTGTACTCCATTTTTTAATTGA
ATTATTTGGTTTGTTCATGTCTAATTTCTTGAGTTCTTTATATATATATT
CTGGAAATTAGCATGGTCATCTCATTAGATGTTGAAAAGCCTTTGACAAA
ATCTAACACTCTTATATGATAAAAACCTTGGAGAGATTAGGGATACAAGA
GACACACTTAAACATAATAAAGGCACTATATATCAAGCCAATAGTCATCA
TTAAATTATATGGTAAAGAAACTCAAAGCAATTTCATTAAAATCATAAAT
AATATAGTCNNTTTCCCCCCCCCCCCCCCCTATTCAATATAGCACTTGAA
ATACTAGCTAGAGTAATAAAACAAATAAAAGACGATCAAGGGGATACTAA
TTGGAAAGGAAGAACGTCTGAACATGGCTCATTGGTTAACATCACTGAGC
TCAATTTCCAGCATCCATATGGTGGTTTACATCCATCCATAATGTCATCC
CACTGTCCTCTGCTGGTATGTCCGACGACTGTGACTTGCACTCACATACA
TACACTACATCCTTTTTAAAACATCACGAATAAGTCAAAGCACTCCTATT
TGTAGATGACATGATACTACACTTTAACATTTCCCCCAAATTCTACCATT
TTATCTCTACAGCCTTATAAACCACTTCTCCTAAAGCGTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_n10.b1 MSMg01no274_n10.b1 CHROMAT_FILE:
MSMg01no274_n10.b1 PHD_FILE: MSMg01no274_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:27 2005
         (272 letters)



>mm_chr9_58666750_58667421
          Length = 672

 Score =  505 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatatgctcatcttaaaattcttgtagggatgaagaggtgttttgttatacaga 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggaattcatatgttcatcttaaaattcttgtagggatgaagaggtgttttgttatacaga 413

                                                                       
Query: 64  actgttacctctggtaaaccctagctgggtccccaagggaaatcttccctcaggcatgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 actgttacctctggtaaaccctagctgggtccccaagggaaatcttccctcaggcatgag 353

                                                                       
Query: 124 cacttaccccacccccataagccctgcagcagctaagtggaatcagcagcagcttgtctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cacttaccccacccccataagccctgcagcagctaagtggaatcagcagcagcttgtctt 293

                                                                       
Query: 184 gacccttcgatcaggatcacccctccacagaaaacaggagtgagggtctccagactcata 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gacccttcgatcaggatcgcccctccacagaaaacaggagtgagggtctccagactcata 233

                                        
Query: 244 cgcagctccacctctttctcctgtgagga 272
           |||||||||||||||||||||||||||||
Sbjct: 232 cgcagctccacctctttctcctgtgagga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)