BAC Information

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BAC

Clone NameMSMg01-274O03
Chromosome9 (Build37)
Map Location 20,323,470 - 20,324,157
singlet/doubletsinglet
Overlap gene5730601F06Rik
Upstream geneOlfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426
Downstream gene7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274O03.T7 (MSMg01no274_o03.b1)MSMg01-274O03.TJ (MSMg01no274_o03.g1)
ACCAG413487AG413488
length741739
length of high quality
(start - end)
697 (43 - 739)666 (72 - 737)
definitionCHROMAT_FILE: MSMg01no274_o03.b1 PHD_FILE: MSMg01no274_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:30 2005CHROMAT_FILE: MSMg01no274_o03.g1 PHD_FILE: MSMg01no274_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTCTCTTGCGAGTGAATATGATCAAAATACATTATATGAATTATAG
TCATACATATACTTTTTCTGCTTTATACAATCAACATTGTCAAATAAAAA
GGTGTATGGAACATCTGTGCTGGGGAGGAGGAAGAGGAAGAAGAGGAGGA
GGAAGAGAAAGAAGAAGAAAAAGAAAAGGAGGAAGAGGAGGAGGAGGAGG
AGGAAGCAGCAGTAGCCACCCCAGCCCCAGCCCCTCAGAAATGGCTGAGT
GTGTAATGGCATTTGCCACCAAGCCTAAAAACCTAAGGTTCCCCGAGTTC
AATTCCTGGGACCCATACGATGAAAGGAAAGATGGACACCTGACACTTAC
CCCAGGATATACATGCTCTCATGTGGACAAAATCAAATGGAGTTTAACCC
GTTAAAAGGCTGTGGATATAGCTCAGTGACAGAGCACTTATTTACCATGT
CCAAGGCCCCAAGTTCGCCACCCAGACTCTGTCTCTGTCTCTGTCTCTCT
CTCTCTGTCTCTCTCTCTCTCGCGCGCTCTCTCTCTCTCTCTCTCTCTCT
CTCACACACACACACACACCTTACCTTTGTGTACTCTCATATAACAAAGG
TGTATTAACTCAAAAACTCAGTAGACTGTATGAACTTCCAAAGCTCTCAT
CAATTGGTAATACAGTTATTCAGGACTGTAAGAGCAGGCTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTACACTTAAGCAATCCTCAGCCCCCAAG
TGCTGGGTTATCAGGCATGCACTACTACATCCAGCTCCAAGTCCCTGATT
TTTCAGTGGCTATTCTTATGTCCCTTTGCACGTTGATACTTAGAGTGCTG
AAAGTTTCCCTGGGGCTGGGGCTCAGTGGGTACAGTGCTGGCCTATCATG
AGGCAGGCTCTGGATTCAATTCCTTGCACCTAAGACTCAGGGGTGGTGTT
ACCCTCCTGTAACCCCAACACACAAGAGGTCAGGGCAGGTAGATCACAAG
TTCAAGGTTACCTTCGGCTATATAGTTAGTTCAAGGCCAGCCTAGGCTTC
ATGAGATACAGCATACATATGGCAGTCCAAAGACAACCTAGAGTGTCAGT
GTCCACTGTCCACCTTGTTTGAGACAGTGTCTTGTTCATACCTGTGTAAG
CCAGTCTAGAAGGTCCAAGAGCTTCCAGGATTCTCCTGTCTGCACCTCCC
ACTTTGATAGAGTGTTAGGGTTACAGACATGATCTCCAGTGTCTGTTTTA
TGTGGGTTGTGGGGAACCAAACTCAGGTCCCCCTTGTTTCCCCACATGTG
CATGTGTGTGCTGGGATGCACTTGTACACATGTGCAGAGACCAGAGGAAG
ATCTCAGCTAGTGATGTTCCTCAGGTACCTCCCACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_o03.b1 MSMg01no274_o03.b1 CHROMAT_FILE:
MSMg01no274_o03.b1 PHD_FILE: MSMg01no274_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:30 2005
         (697 letters)



>mm_chr9_20323265_20324361
          Length = 1097

 Score = 1102 bits (570), Expect = 0.0
 Identities = 660/702 (94%), Gaps = 27/702 (3%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcacttctcttgcgagtgaatatgatcaaaatacattatatgaattatagtcatacatat 68
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 tcacttctcttgggagtgaatatgatcaaaatacattatatgagttatagtcatacatat 265

                                                                       
Query: 69  actttttctgctttatacaatcaacattgtcaaataaaaaggtgtatggaacatctgtgc 128
           ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 actttttgtgttttgtacaatcaacattgtcaaataaaaaggtgtatggaacatctgtgc 325

                                                                       
Query: 129 tggggaggagga--a-gaggaagaagaggaggaggaag----agaa-ag-aagaagaaaa 179
           ||||||||||||  | ||||||||||| ||||||||||    |||| || ||||||||||
Sbjct: 326 tggggaggaggaggaggaggaagaagaagaggaggaagaggaagaagagaaagaagaaaa 385

                                                                       
Query: 180 agaaaaggaggaagaggaggaggaggaggaggaagcagcagtagccaccccagccccagc 239
           ||||||||||||||||||||||||||||||      ||||||||||||||||||||||||
Sbjct: 386 agaaaaggaggaagaggaggaggaggagga------agcagtagccaccccagccccagc 439

                                                                       
Query: 240 ccctcagaaatggctgagtgtgtaatggcatttgccaccaagcctaaaaacctaaggttc 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcctcagaaatggctgagtgtgtaatggcatttgccaccaagcctaaaaacctaaggttc 499

                                                                       
Query: 300 cccgagttcaattcctgggacccatacgatgaaaggaaagatggacacctgacacttacc 359
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 cccgagttcaatttctgggacccacacgatgaaaggaaagatggacacctgacacttacc 559

                                                                       
Query: 360 ccaggatatacatgctctcatgtggacaaaatcaaatggagtttaacccgttaaaaggct 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccaggatatacatgcactcatgtggacaaaatcaaatggagtttaacccgttaaaaggct 619

                                                                       
Query: 420 gtggatatagctcagtgacagagcacttatttaccatgtccaaggccccaagttcgccac 479
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 gtggatatagctcagtgacagagcacttatttaccatgtccaaggccccaggttcgccac 679

                                                                       
Query: 480 ccagactctgtctctgtctctgtctct--ctct--ctctgtctctctctctctcgcgcgc 535
           | |||||||||||| ||||||||||||  ||||  |||||||||||||||||||      
Sbjct: 680 ctagactctgtctcagtctctgtctctgtctctgtctctgtctctctctctctc------ 733

                                                                       
Query: 536 tctctctctctctctctctctctctcacacacacacacacaccttacctttgtgtactct 595
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 734 --tctctctctctctctctctctcacacacacacacacacaccttacctttgtgtactct 791

                                                                       
Query: 596 catataacaaaggtgtattaactcaaaaactcagtagactgtatgaacttccaaagctct 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 catataacaaaggtgtattaactcaaaaactcagtagactgtatgaacttccaaagctct 851

                                                     
Query: 656 catcaattggtaatacagttattcaggactgtaagagcaggc 697
           |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 852 catcaattggtaatacagttattcaggactgtaagaacaggc 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)