BAC Information

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BAC

Clone NameMSMg01-275P18
Chromosome9 (Build37)
Map Location 92,217,697 - 92,386,839
singlet/doubletdoublet
Overlap gene1700057G04Rik, LOC666850, Plscr4
Upstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2
Downstream genePlod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275P18.T7 (MSMg01no275_p18.b1)MSMg01-275P18.TJ (MSMg01no275_p18.g1)
ACCAG414290AG414291
length752752
length of high quality
(start - end)		627 (126 - 752)312 (437 - 748)
definitionCHROMAT_FILE: MSMg01no275_p18.b1 PHD_FILE: MSMg01no275_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:49 2005CHROMAT_FILE: MSMg01no275_p18.g1 PHD_FILE: MSMg01no275_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,217,697 - 92,218,323)(92,386,528 - 92,386,839)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGTTTACCAGGAAAATTCCACTGTTTATTCTTGATTTCCTTA
GTGCACAATAGTTCCTGTTAACCAATAAGTTAAAATTTATTACAAGAGGA
AAAAACTGAAGATCCTATATTTAGAAATAGTACAAAGTTTCTATTCATAA
CCAAACCAAGAAGAAACATGTTTTTATTTCAGAAGGTTGTTATCTGCTTA
CTTTATGTCTTTCTTCTATATAATATTTCTAAGAAAGCAACTTTGCATTC
CAATAAAAATCATAGGAAAATATTATACATATTTACATCTGAATCACCCC
TCTTAAATGTAATACTAAAACACAAAGCATATTTGAAAGATAATACTATT
CTATCAATTTCTAAACAATAAGCAGTAAAGGAATAAAGAATTACATAGGC
ATATTTGAGAGGAGACACAAGATTGTCATGATTTTAGATTACCGCTTTAC
TTTTAGAAAAGTACATTTATAATTTATTATAATACAATAACATTTATAAT
ACAATAAGATTTACAATATACTTTGAACTATTCATTTAAAATAATATCTA
TTGAAAGTTCAACGTCAACTTTTCATTTAAAATGCAATGGTACTATTAAA
AATGCTACAGGATAAATATCAAGAGAAATATTCAAGAGCTCCACATAAAA
AGCATGATTGATAACACTGTGGAGAGTTATGGTGGCTAACCAAATGCCCC
AA

CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTTAGAGAAGTATTAGCATC
ATGAACACTGAAGTATGAAGCACCGAAATATGAAGCATTCTGACCCTCAC
TATCAATGTGATACAAAGTGCTAGAATGGGGTGTGGGTGGGCAAAGGACA
GGCTTATACGTGAGCTCTCAGAATTCTGTTTATCTGGTTTATATGCAAAA
TACAAGATGTCATACAGAAATCATGTATGTCTAGTTAAAATTAGAGGTAC
ATTTTAACATTTAAGGTAGTTAGTTTTTAGTCAAGAACTCATGATTTTTT
TTTAAATATTAACTCATTTCCCCCCACCCCACAACTGAGGAGAACAATCT
TTCTCATAAAAACATTAGTATAATTAAAAAATAAAGCACCTGTTATTTCA
AAAAGGTCTGTTGGCTACATCTCTTCTCTCAGGATAATTCAACCCAAGAG
CACTTAATCCTTTTTAAATAAACTCTAAGAGAATATATCCATTAAAAAAA
AAACCCACACAGCATCTATGTGGAGGTCGACAGCAAAGGCATGAAACTCA
TTAATTAAATCAGTGATTCATACGTACACTGTCCTTAGTACAAGTCTGCT
GGTCTTCCATAGTCCTCATTGATAATCTGGAGAAAATATGGAAGCAACAA
ATTTACTGTGTCTTCTTACTGATTGCATATAATGAGTTGTTTACCACGCA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_p18.b1 MSMg01no275_p18.b1 CHROMAT_FILE:
MSMg01no275_p18.b1 PHD_FILE: MSMg01no275_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:49 2005
         (627 letters)



>mm_chr9_92217497_92218523
          Length = 1027

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagttaaaatttattacaagaggaaaaaactgaagatcctatatttagaaatagtacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagttaaaatttattacaagaggaaaaaactgaagatcctatatttagaaatagtacaa 260

                                                                       
Query: 61  agtttctattcataaccaaaccaagaagaaacatgtttttatttcagaaggttgttatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttctattcataaccaaaccaagaagaaacatgtttttatttcagaaggttgttatct 320

                                                                       
Query: 121 gcttactttatgtctttcttctatataatatttctaagaaagcaactttgcattccaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttactttatgtctttcttctatataatatttctaagaaagcaactttgcattccaata 380

                                                                       
Query: 181 aaaatcataggaaaatattatacatatttacatctgaatcacccctcttaaatgtaatac 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 381 aaaatcataggaaaatattatacatacttacatctgaatcacccctcttaaatgtaaaac 440

                                                                       
Query: 241 taaaacacaaagcatatttgaaagataatactattctatcaatttctaaacaataagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaacacaaagcatatttgaaagataatactattctatcaatttctaaacaataagcag 500

                                                                       
Query: 301 taaaggaataaagaattacataggcatatttgagaggagacacaagattgtcatgatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaggaataaagaattacataggcatatttgagaggagacacaagattgtcatgatttt 560

                                                                       
Query: 361 agattaccgctttacttttagaaaagtacatttataatttattataatacaataacattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agattaccgctttacttttagaaaagtacatttataatttattataatacaataacattt 620

                                                                       
Query: 421 ataatacaataagatttacaatatactttgaactattcatttaaaataatatctattgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatacaataagatttacaatatactttgaactattcatttaaaataatatctattgaa 680

                                                                       
Query: 481 agttcaacgtcaacttttcatttaaaatgcaatggtactattaaaaatgctacaggataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttcaacgtcaacttttcatttaaaatgcaatggtactattaaaaatgctacaggataa 740

                                                                       
Query: 541 atatcaagagaaatattcaagagctccacataaaaagcatgattgataacactgtggaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatcaagagaaatattcaagagctccacataaaaagcatgattgataacactgtggaga 800

                                      
Query: 601 gttatggtggctaaccaaatgccccaa 627
           |||||||||||||||||  ||||||||
Sbjct: 801 gttatggtggctaaccagttgccccaa 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_p18.g1 MSMg01no275_p18.g1 CHROMAT_FILE:
MSMg01no275_p18.g1 PHD_FILE: MSMg01no275_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:49 2005
         (312 letters)



>mm_chr9_92386328_92387039
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacctgttatttcaaaaaggtctgttggctacatctcttctctcaggataattcaaccca 60
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacctgctatttcaaaaaggcctgttggctacatctcttctctcaggataattcaaccca 453

                                                                       
Query: 61  agagcacttaatcctttttaaataaactctaagagaatatatccattaaaaaaaaaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agagcacttaatcctttttaaataaactctaagagaatatatccattaaaaaaaaaaccc 393

                                                                       
Query: 121 acacagcatctatgtggaggtcgacagcaaaggcatgaaactcattaattaaatcagtga 180
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atacagcatctatgtgtaggtcgacagcaaaggcatgaaactcattaattaaatcagtga 333

                                                                       
Query: 181 ttcatacgtacactgtccttagtacaagtctgctggtcttccatagtcctcattgataat 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttcatacatacactgtccttagtacaagtctgctggtcttccatagtcctcattgataat 273

                                                                       
Query: 241 ctggagaaaatatggaagcaacaaatttactgtgtcttcttactgattgcatataatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctggagaaaatatggaagcaacaaatttactgtgtcttcttactgattgcatataatgag 213

                       
Query: 301 ttgtttaccacg 312
           ||||||||||||
Sbjct: 212 ttgtttaccacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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